Wall clock time and date at job start Mon Mar 30 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 H 1.09000 * 109.48030 * 305.01947 * 3 2 1 5 5 C 1.53094 * 109.47724 * 184.99979 * 3 2 1 6 6 C 1.53183 * 109.15859 * 182.39643 * 5 3 2 7 7 N 1.46900 * 109.54110 * 176.84747 * 6 5 3 8 8 C 1.50696 * 109.54566 * 297.11032 * 6 5 3 9 9 H 1.08005 * 119.99905 * 359.56532 * 8 6 5 10 10 C 1.37880 * 120.00242 * 179.55513 * 8 6 5 11 11 N 1.31511 * 120.00034 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99889 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46773 * 120.00198 * 12 10 8 15 15 H 1.48501 * 109.46834 * 240.00121 * 12 10 8 16 16 C 1.53176 * 109.03838 * 56.98139 * 6 5 3 17 17 C 1.53093 * 109.16348 * 303.01796 * 16 6 5 18 18 O 1.42902 * 109.49144 * 65.03977 * 3 2 1 19 19 H 1.09003 * 109.46943 * 59.99808 * 1 2 3 20 20 H 1.08998 * 109.47332 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.47173 * 300.00124 * 1 2 3 22 22 H 1.08999 * 109.47184 * 239.99810 * 2 1 3 23 23 H 1.09002 * 109.47382 * 119.99886 * 2 1 3 24 24 H 1.08997 * 109.52488 * 62.49730 * 5 3 2 25 25 H 1.08998 * 109.57480 * 302.33117 * 5 3 2 26 26 H 1.00900 * 111.00027 * 180.44094 * 7 6 5 27 27 H 1.00903 * 111.00023 * 304.39912 * 7 6 5 28 28 H 0.96997 * 120.00487 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.52469 * 183.11228 * 16 6 5 30 30 H 1.09001 * 109.52097 * 62.92137 * 16 6 5 31 31 H 1.09002 * 109.48198 * 177.59219 * 17 16 6 32 32 H 1.08999 * 109.48029 * 297.61833 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8416 5 6 3.5657 1.4445 -0.1258 6 6 4.0733 2.8885 -0.0648 7 7 5.5417 2.8955 -0.1089 8 6 3.5284 3.6643 -1.2361 9 1 2.8898 3.1759 -1.9574 10 6 3.8448 4.9978 -1.3871 11 7 4.6226 5.5926 -0.5091 12 14 3.1686 5.9597 -2.8387 13 1 2.3254 5.0674 -3.6742 14 1 2.3480 7.0934 -2.3422 15 1 4.2946 6.4830 -3.6533 16 6 3.5969 3.5309 1.2416 17 6 2.0699 3.4482 1.3146 18 8 1.6630 2.0816 1.2213 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.8534 0.9972 -1.0772 25 1 4.0004 0.8707 0.6927 26 1 5.9003 3.8374 -0.0627 27 1 5.9283 2.3247 0.6279 28 1 4.8455 6.5306 -0.6154 29 1 3.9068 4.5756 1.2681 30 1 4.0313 2.9995 2.0884 31 1 1.7282 3.8655 2.2618 32 1 1.6355 4.0139 0.4903 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270687.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:54 Heat of formation + Delta-G solvation = -64.607693 kcal Electronic energy + Delta-G solvation = -13834.013255 eV Core-core repulsion = 11600.717686 eV Total energy + Delta-G solvation = -2233.295569 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.73550 -34.87720 -33.25844 -31.55131 -28.89082 -28.53768 -25.45717 -23.31504 -22.21769 -20.33578 -18.92297 -15.91523 -15.52493 -15.11368 -14.88386 -13.90278 -13.70047 -13.19975 -12.85800 -12.67909 -12.50372 -11.81819 -11.68310 -11.25387 -10.95734 -10.70332 -10.64002 -10.49588 -10.16217 -10.09071 -9.55008 -9.50610 -8.93699 -8.60936 -8.39617 -6.97595 -6.07739 -4.12965 3.25540 3.34531 3.38255 4.38053 4.66865 5.17016 5.39972 5.56243 5.70764 6.11844 6.13028 6.16153 6.22084 6.31827 6.36875 6.49183 6.51485 6.62534 6.63591 6.84454 6.94804 6.98899 7.14458 7.33278 7.61986 7.92986 8.24255 8.26959 8.70169 9.04945 9.23985 9.54929 10.98007 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.013357 C = 0.011916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.455055 B = 2095.716286 C = 2349.211676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.100 3.900 4 H 0.062 0.938 5 C -0.126 4.126 6 C 0.240 3.760 7 N -0.842 5.842 8 C -0.490 4.490 9 H 0.058 0.942 10 C 0.069 3.931 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.175 4.175 17 C 0.079 3.921 18 O -0.396 6.396 19 H 0.050 0.950 20 H 0.045 0.955 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.357 0.643 27 H 0.292 0.708 28 H 0.261 0.739 29 H 0.099 0.901 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 -5.348 1.853 7.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.042 3.958 4 H 0.080 0.920 5 C -0.165 4.165 6 C 0.148 3.852 7 N -0.372 5.372 8 C -0.529 4.529 9 H 0.076 0.924 10 C -0.132 4.132 11 N -0.538 5.538 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.210 1.210 16 C -0.215 4.215 17 C 0.002 3.998 18 O -0.316 6.316 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.174 0.826 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.445 -5.579 1.280 7.247 hybrid contribution -0.126 1.263 0.042 1.269 sum -4.570 -4.317 1.322 6.424 Atomic orbital electron populations 1.21703 0.96056 1.00473 1.02150 1.21573 0.95946 0.96117 1.01766 1.21985 0.94505 0.91891 0.87388 0.92035 1.22133 0.94823 0.99300 1.00210 1.18384 0.85344 0.89377 0.92089 1.59332 1.08380 1.18747 1.50744 1.21097 1.28786 0.94171 1.08844 0.92395 1.24939 0.94702 0.97602 0.95981 1.69616 1.37146 1.11729 1.35274 0.86533 0.78759 0.79839 0.82834 1.19807 1.21161 1.20978 1.22940 0.95242 1.04787 0.98504 1.22375 0.95858 0.81835 0.99762 1.87683 1.79165 1.25903 1.38877 0.93086 0.93618 0.92173 0.91316 0.91991 0.92064 0.94174 0.82585 0.89877 0.92853 0.88240 0.95999 0.91815 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.81 37.16 0.36 -1.75 16 2 C -0.12 -1.89 5.64 -26.73 -0.15 -2.04 16 3 C 0.10 2.02 2.41 -26.68 -0.06 1.95 16 4 H 0.06 1.33 6.87 -51.93 -0.36 0.97 16 5 C -0.13 -2.73 4.42 -26.59 -0.12 -2.85 16 6 C 0.24 5.80 0.68 -132.57 -0.09 5.71 16 7 N -0.84 -20.31 8.87 -0.04 0.00 -20.31 16 8 C -0.49 -12.93 6.47 -34.44 -0.22 -13.15 16 9 H 0.06 1.55 6.92 -52.48 -0.36 1.18 16 10 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 11 N -0.90 -23.94 9.55 55.43 0.53 -23.41 16 12 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.17 -4.10 5.03 -26.59 -0.13 -4.23 16 17 C 0.08 1.71 6.62 37.21 0.25 1.96 16 18 O -0.40 -8.41 9.94 -35.23 -0.35 -8.76 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.91 7.83 -51.92 -0.41 0.51 16 22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.36 9.14 6.97 -39.29 -0.27 8.87 16 27 H 0.29 6.37 8.98 -39.29 -0.35 6.01 16 28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.10 2.55 6.01 -51.93 -0.31 2.24 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.28 7.38 -51.93 -0.38 0.90 16 LS Contribution 249.91 15.07 3.77 3.77 Total: -1.00 -26.87 249.91 -6.30 -33.17 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.97 Total: 12.39 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.26 Total: -12.69 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.53 Total: -43.72 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.35 Total: -8.76 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.87 -6.30 -33.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270687.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.436 kcal (2) G-P(sol) polarization free energy of solvation -26.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds