Wall clock time and date at job start Mon Mar 30 2020 02:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 H 1.09000 * 109.48030 * 305.01947 * 3 2 1 5 5 C 1.53094 * 109.47724 * 184.99979 * 3 2 1 6 6 C 1.53183 * 109.15859 * 182.39643 * 5 3 2 7 7 N 1.46900 * 109.54110 * 176.84747 * 6 5 3 8 8 C 1.50696 * 109.54566 * 297.11032 * 6 5 3 9 9 H 1.08005 * 119.99905 * 359.56532 * 8 6 5 10 10 C 1.37880 * 120.00242 * 179.55513 * 8 6 5 11 11 N 1.31511 * 120.00034 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99889 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46773 * 120.00198 * 12 10 8 15 15 H 1.48501 * 109.46834 * 240.00121 * 12 10 8 16 16 C 1.53176 * 109.03838 * 56.98139 * 6 5 3 17 17 C 1.53093 * 109.16348 * 303.01796 * 16 6 5 18 18 O 1.42902 * 109.49144 * 65.03977 * 3 2 1 19 19 H 1.09003 * 109.46943 * 59.99808 * 1 2 3 20 20 H 1.08998 * 109.47332 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.47173 * 300.00124 * 1 2 3 22 22 H 1.08999 * 109.47184 * 239.99810 * 2 1 3 23 23 H 1.09002 * 109.47382 * 119.99886 * 2 1 3 24 24 H 1.08997 * 109.52488 * 62.49730 * 5 3 2 25 25 H 1.08998 * 109.57480 * 302.33117 * 5 3 2 26 26 H 1.00900 * 111.00027 * 180.44094 * 7 6 5 27 27 H 1.00903 * 111.00023 * 304.39912 * 7 6 5 28 28 H 0.96997 * 120.00487 * 179.97438 * 11 10 8 29 29 H 1.09004 * 109.52469 * 183.11228 * 16 6 5 30 30 H 1.09001 * 109.52097 * 62.92137 * 16 6 5 31 31 H 1.09002 * 109.48198 * 177.59219 * 17 16 6 32 32 H 1.08999 * 109.48029 * 297.61833 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8416 5 6 3.5657 1.4445 -0.1258 6 6 4.0733 2.8885 -0.0648 7 7 5.5417 2.8955 -0.1089 8 6 3.5284 3.6643 -1.2361 9 1 2.8898 3.1759 -1.9574 10 6 3.8448 4.9978 -1.3871 11 7 4.6226 5.5926 -0.5091 12 14 3.1686 5.9597 -2.8387 13 1 2.3254 5.0674 -3.6742 14 1 2.3480 7.0934 -2.3422 15 1 4.2946 6.4830 -3.6533 16 6 3.5969 3.5309 1.2416 17 6 2.0699 3.4482 1.3146 18 8 1.6630 2.0816 1.2213 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.8534 0.9972 -1.0772 25 1 4.0004 0.8707 0.6927 26 1 5.9003 3.8374 -0.0627 27 1 5.9283 2.3247 0.6279 28 1 4.8455 6.5306 -0.6154 29 1 3.9068 4.5756 1.2681 30 1 4.0313 2.9995 2.0884 31 1 1.7282 3.8655 2.2618 32 1 1.6355 4.0139 0.4903 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270687.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:53 Heat of formation + Delta-G solvation = -82.407377 kcal Electronic energy + Delta-G solvation = -13834.785107 eV Core-core repulsion = 11600.717686 eV Total energy + Delta-G solvation = -2234.067421 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46431 -36.69041 -34.71429 -33.52771 -30.51051 -30.33434 -27.42742 -24.82269 -24.01426 -21.81998 -20.81501 -17.87556 -17.14814 -16.97786 -16.62943 -15.74238 -15.41829 -14.69562 -14.49647 -14.43313 -13.95234 -13.68848 -13.42996 -12.86121 -12.70004 -12.42161 -12.24746 -12.05420 -11.89689 -11.73585 -11.34297 -11.30119 -10.74894 -10.61192 -10.17813 -8.88219 -8.07987 -6.18736 1.38666 1.43369 1.51838 2.43366 3.05540 3.16235 3.95155 4.22205 4.36114 4.40732 4.49531 4.58542 4.64149 4.71751 4.76000 4.94307 5.06461 5.14095 5.14968 5.20180 5.28061 5.35982 5.47425 5.55562 5.64736 5.96919 6.28837 6.54601 6.69900 7.07466 7.33415 7.51231 8.95597 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036715 B = 0.013357 C = 0.011916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.455055 B = 2095.716286 C = 2349.211676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.099 3.901 4 H 0.043 0.957 5 C -0.121 4.121 6 C 0.228 3.772 7 N -0.847 5.847 8 C -0.504 4.504 9 H 0.047 0.953 10 C 0.030 3.970 11 N -0.911 5.911 12 Si 0.944 3.056 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.285 1.285 16 C -0.168 4.168 17 C 0.083 3.917 18 O -0.395 6.395 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.347 0.653 27 H 0.305 0.695 28 H 0.261 0.739 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 -6.250 1.871 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C 0.041 3.959 4 H 0.061 0.939 5 C -0.159 4.159 6 C 0.137 3.863 7 N -0.377 5.377 8 C -0.543 4.543 9 H 0.065 0.935 10 C -0.169 4.169 11 N -0.551 5.551 12 Si 0.771 3.229 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.211 1.211 16 C -0.208 4.208 17 C 0.005 3.995 18 O -0.314 6.314 19 H 0.068 0.932 20 H 0.091 0.909 21 H 0.068 0.932 22 H 0.102 0.898 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.163 0.837 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.193 -6.498 1.304 8.419 hybrid contribution 0.139 1.529 0.042 1.536 sum -5.053 -4.968 1.346 7.213 Atomic orbital electron populations 1.21676 0.94595 1.02147 1.01614 1.21575 0.97221 0.93258 1.02861 1.22085 0.93436 0.94005 0.86364 0.93908 1.22067 0.96001 0.97615 1.00248 1.18504 0.85308 0.90813 0.91706 1.59285 1.08623 1.18259 1.51510 1.21260 1.28910 0.94700 1.09404 0.93480 1.25510 0.95110 0.98384 0.97928 1.69712 1.37552 1.11781 1.36089 0.85720 0.78083 0.78658 0.80400 1.19755 1.20807 1.21063 1.22803 0.96438 1.03241 0.98330 1.22301 0.94630 0.82284 1.00239 1.87698 1.79009 1.25361 1.39367 0.93205 0.90855 0.93157 0.89787 0.91298 0.92483 0.93363 0.83710 0.88467 0.92904 0.90545 0.95486 0.89555 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.81 71.98 0.71 -3.05 16 2 C -0.11 -3.35 5.64 30.59 0.17 -3.18 16 3 C 0.10 3.85 2.41 30.63 0.07 3.92 16 4 H 0.04 1.83 6.87 -2.39 -0.02 1.81 16 5 C -0.12 -5.10 4.42 30.69 0.14 -4.96 16 6 C 0.23 10.96 0.68 2.90 0.00 10.96 16 7 N -0.85 -40.56 8.87 -154.05 -1.37 -41.93 16 8 C -0.50 -26.59 6.47 25.60 0.17 -26.42 16 9 H 0.05 2.53 6.92 -2.91 -0.02 2.51 16 10 C 0.03 1.57 5.21 84.66 0.44 2.02 16 11 N -0.91 -48.71 9.55 21.45 0.20 -48.50 16 12 Si 0.94 42.78 29.54 68.60 2.03 44.80 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 C -0.17 -7.81 5.03 30.68 0.15 -7.66 16 17 C 0.08 3.53 6.62 72.01 0.48 4.01 16 18 O -0.39 -16.15 9.94 -148.98 -1.48 -17.63 16 19 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.05 1.41 7.83 -2.38 -0.02 1.39 16 22 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.35 17.82 6.97 -89.69 -0.62 17.19 16 27 H 0.31 13.07 8.98 -89.69 -0.81 12.26 16 28 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 29 H 0.08 3.93 6.01 -2.39 -0.01 3.92 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.04 1.71 7.38 -2.39 -0.02 1.69 16 Total: -1.00 -55.33 249.91 1.39 -53.94 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.32 Total: 33.69 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 2.33 Total: -24.36 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -1.16 Total: -90.43 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.48 Total: -17.63 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -55.33 1.39 -53.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270687.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.470 kcal (2) G-P(sol) polarization free energy of solvation -55.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds