Wall clock time and date at job start Mon Mar 30 2020 01:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00362 * 2 1 4 4 H 1.48496 * 109.47555 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46883 * 299.99570 * 3 2 1 6 6 H 1.48507 * 109.46764 * 59.99413 * 3 2 1 7 7 C 1.37882 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 182.64404 * 7 2 1 9 9 C 1.50702 * 119.99464 * 2.64570 * 7 2 1 10 10 C 1.52991 * 109.47404 * 58.53484 * 9 7 2 11 11 O 1.42899 * 109.47609 * 54.80610 * 10 9 7 12 12 N 1.46294 * 114.00280 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46863 * 178.53464 * 9 7 2 14 14 C 1.53001 * 109.47340 * 59.99501 * 13 9 7 15 15 C 1.53004 * 109.46778 * 60.00381 * 14 13 9 16 16 C 1.52993 * 109.46887 * 299.99871 * 15 14 13 17 17 C 1.52995 * 109.47400 * 60.00129 * 16 15 14 18 18 H 0.97001 * 119.99699 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47039 * 294.80954 * 10 9 7 20 20 H 1.09004 * 109.47132 * 174.80996 * 10 9 7 21 21 H 1.00905 * 111.00201 * 179.97438 * 12 11 10 22 22 H 1.00899 * 111.00326 * 303.96008 * 12 11 10 23 23 H 1.09000 * 109.47464 * 180.02562 * 13 9 7 24 24 H 1.09007 * 109.46906 * 299.99651 * 13 9 7 25 25 H 1.09001 * 109.47064 * 300.00457 * 14 13 9 26 26 H 1.08999 * 109.47032 * 180.02562 * 14 13 9 27 27 H 1.08994 * 109.46792 * 179.97438 * 15 14 13 28 28 H 1.09000 * 109.46784 * 59.99965 * 15 14 13 29 29 H 1.09000 * 109.47485 * 299.99665 * 16 15 14 30 30 H 1.09007 * 109.46919 * 180.02562 * 16 15 14 31 31 H 1.08998 * 109.47429 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.47038 * 60.00114 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0837 -1.1946 0.0437 9 6 1.2521 -2.4985 -0.0591 10 6 0.3950 -2.5354 -1.3259 11 8 1.2212 -2.2975 -2.4673 12 7 0.4979 -2.3119 -3.7388 13 6 2.2471 -3.6605 -0.0826 14 6 3.1044 -3.6236 1.1842 15 6 2.2027 -3.7491 2.4139 16 6 1.2078 -2.5871 2.4374 17 6 0.3506 -2.6239 1.1706 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3738 -1.7648 -1.2670 20 1 -0.0773 -3.5136 -1.4167 21 1 1.1227 -2.1393 -4.5122 22 1 0.0007 -3.1812 -3.8623 23 1 1.7030 -4.6040 -0.1262 24 1 2.8895 -3.5712 -0.9587 25 1 3.6485 -2.6802 1.2273 26 1 3.8135 -4.4512 1.1672 27 1 2.8134 -3.7232 3.3163 28 1 1.6586 -4.6926 2.3707 29 1 1.7519 -1.6436 2.4806 30 1 0.5657 -2.6762 3.3137 31 1 -0.3586 -1.7963 1.1876 32 1 -0.1936 -3.5673 1.1275 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261302103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:02 Heat of formation + Delta-G solvation = -37.925243 kcal Electronic energy + Delta-G solvation = -13879.071378 eV Core-core repulsion = 11646.932848 eV Total energy + Delta-G solvation = -2232.138531 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81472 -36.99790 -34.53307 -32.22791 -31.15786 -29.99400 -26.93245 -25.75392 -23.08769 -21.67261 -20.40373 -17.61234 -17.13075 -16.97082 -16.62239 -15.71717 -15.45404 -14.78282 -14.68355 -14.18085 -13.83910 -13.19457 -12.89614 -12.72807 -12.60213 -12.42481 -12.34175 -11.80744 -11.65419 -11.41710 -11.16153 -10.72724 -10.55153 -10.32283 -10.20366 -9.58008 -7.88399 -5.96882 1.41577 1.46294 1.53635 2.23105 2.53490 3.37035 4.21191 4.26631 4.30728 4.52500 4.71631 4.77622 4.94147 4.97372 5.04938 5.06934 5.08890 5.19895 5.33452 5.45231 5.52193 5.62776 5.76228 5.82436 5.85302 6.01553 6.19851 6.30630 6.51557 6.66563 7.01710 7.66238 9.10829 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.019692 C = 0.013293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.437984 B = 1421.536003 C = 2105.858583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.481 4.481 8 H 0.042 0.958 9 C 0.069 3.931 10 C 0.083 3.917 11 O -0.243 6.243 12 N -0.694 5.694 13 C -0.096 4.096 14 C -0.107 4.107 15 C -0.105 4.105 16 C -0.099 4.099 17 C -0.098 4.098 18 H 0.253 0.747 19 H 0.053 0.947 20 H 0.011 0.989 21 H 0.366 0.634 22 H 0.341 0.659 23 H 0.045 0.955 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 -6.907 0.242 7.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.067 3.933 10 C 0.005 3.995 11 O -0.257 6.257 12 N -0.261 5.261 13 C -0.134 4.134 14 C -0.144 4.144 15 C -0.143 4.143 16 C -0.137 4.137 17 C -0.136 4.136 18 H 0.062 0.938 19 H 0.071 0.929 20 H 0.029 0.971 21 H 0.180 0.820 22 H 0.151 0.849 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.608 -6.111 0.527 6.341 hybrid contribution 0.595 0.328 -0.642 0.935 sum 2.203 -5.783 -0.115 6.189 Atomic orbital electron populations 1.69889 1.06388 1.25882 1.52449 1.25350 0.95359 1.00864 0.95539 0.85917 0.79295 0.81928 0.76872 1.19888 1.21921 1.21021 1.21060 0.92056 0.90809 1.47960 0.93950 1.18246 0.92275 0.93457 0.89278 1.22569 0.95332 0.95949 0.85615 1.90687 1.29647 1.94952 1.10448 1.64134 1.27221 1.39486 0.95279 1.21462 0.97741 0.97107 0.97075 1.21407 0.97580 1.00684 0.94754 1.21438 0.97345 0.97984 0.97511 1.21285 0.97439 0.98539 0.96444 1.21360 0.98333 0.98826 0.95116 0.93758 0.92859 0.97066 0.81981 0.84864 0.93671 0.94552 0.93320 0.91876 0.91566 0.92031 0.93664 0.93126 0.91936 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.89 9.42 21.45 0.20 -50.69 16 2 C 0.03 1.47 5.14 84.66 0.44 1.91 16 3 Si 0.93 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.48 -25.55 5.60 25.60 0.14 -25.40 16 8 H 0.04 2.32 6.66 -2.91 -0.02 2.30 16 9 C 0.07 3.28 0.34 -52.93 -0.02 3.27 16 10 C 0.08 4.02 4.95 71.98 0.36 4.37 16 11 O -0.24 -11.54 10.99 -50.14 -0.55 -12.09 16 12 N -0.69 -25.75 10.79 37.02 0.40 -25.35 16 13 C -0.10 -3.96 4.59 30.60 0.14 -3.82 16 14 C -0.11 -3.91 5.70 30.60 0.17 -3.73 16 15 C -0.11 -3.55 5.92 30.59 0.18 -3.37 16 16 C -0.10 -3.99 5.70 30.59 0.17 -3.82 16 17 C -0.10 -4.45 4.53 30.59 0.14 -4.31 16 18 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 19 H 0.05 2.93 6.22 -2.38 -0.01 2.92 16 20 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 21 H 0.37 11.27 9.25 -89.69 -0.83 10.44 16 22 H 0.34 10.48 9.18 -89.69 -0.82 9.66 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 1.56 7.83 -2.38 -0.02 1.54 16 25 H 0.05 1.98 6.59 -2.39 -0.02 1.96 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 2.04 7.22 -2.39 -0.02 2.02 16 30 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.06 3.23 6.09 -2.39 -0.01 3.22 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -59.96 248.86 3.26 -56.69 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.54 Total: 19.48 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 1.73 Total: -34.91 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: 0.60 Total: -76.03 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.55 Total: -12.09 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -59.96 3.26 -56.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.768 kcal (2) G-P(sol) polarization free energy of solvation -59.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds