Wall clock time and date at job start Mon Mar 30 2020 02:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86802 * 120.00140 * 2 1
4 4 H 1.48504 * 109.46693 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.47159 * 300.00269 * 3 2 1
6 6 H 1.48500 * 109.46771 * 60.00749 * 3 2 1
7 7 C 1.37878 * 119.99753 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00100 * 179.97438 * 7 2 1
9 9 C 1.50704 * 119.99967 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47056 * 180.02562 * 9 7 2
11 11 H 1.08996 * 109.57356 * 55.24680 * 10 9 7
12 12 C 1.54507 * 109.57177 * 294.99527 * 10 9 7
13 13 C 1.45861 * 111.59474 * 162.99980 * 12 10 9
14 14 N 1.47808 * 112.91973 * 61.32903 * 13 12 10
15 15 C 1.44276 * 109.45181 * 276.74376 * 14 13 12
16 16 C 1.54063 * 111.98188 * 96.43878 * 15 14 13
17 17 C 1.50459 * 109.57216 * 175.63416 * 10 9 7
18 18 H 1.08999 * 108.77441 * 91.04913 * 17 10 9
19 19 O 1.42900 * 108.77182 * 332.75453 * 17 10 9
20 20 H 0.97006 * 119.99619 * 359.97438 * 1 2 3
21 21 H 1.08997 * 109.47338 * 59.99189 * 9 7 2
22 22 H 1.08999 * 109.46827 * 299.99913 * 9 7 2
23 23 H 1.09000 * 109.05750 * 42.45604 * 12 10 9
24 24 H 1.08996 * 109.05731 * 283.54658 * 12 10 9
25 25 H 1.09004 * 108.79829 * 300.44578 * 13 12 10
26 26 H 1.08997 * 108.70749 * 182.15364 * 13 12 10
27 27 H 1.00896 * 111.00108 * 153.88114 * 14 13 12
28 28 H 1.09005 * 108.97294 * 217.07838 * 15 14 13
29 29 H 1.08990 * 108.98141 * 335.79204 * 15 14 13
30 30 H 1.09000 * 108.92169 * 79.62944 * 16 15 14
31 31 H 1.08999 * 108.91958 * 198.18408 * 16 15 14
32 32 H 0.96705 * 113.99558 * 179.97438 * 19 17 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7093 1.3462 -0.0006
5 1 1.8905 2.3965 -1.2124
6 1 1.8906 2.3963 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1942 -0.0010
9 6 1.2509 -2.4992 -0.0017
10 6 2.2451 -3.6622 -0.0015
11 1 2.9268 -3.5597 0.8429
12 6 3.0501 -3.6553 -1.3203
13 6 4.2570 -4.4677 -1.2168
14 7 3.9709 -5.8903 -0.9356
15 6 3.7766 -6.0701 0.4827
16 6 2.2849 -6.0505 0.8675
17 6 1.4981 -4.9638 0.1053
18 1 1.2814 -5.3273 -0.8992
19 8 0.2633 -4.7309 0.7857
20 1 -0.4850 0.8401 0.0004
21 1 0.6245 -2.5563 -0.8919
22 1 0.6240 -2.5575 0.8880
23 1 3.3309 -2.6298 -1.5605
24 1 2.4241 -4.0483 -2.1213
25 1 4.8805 -4.0701 -0.4160
26 1 4.8062 -4.3990 -2.1558
27 1 4.7129 -6.4827 -1.2768
28 1 4.2072 -7.0260 0.7811
29 1 4.2906 -5.2699 1.0151
30 1 1.8494 -7.0244 0.6439
31 1 2.1985 -5.8640 1.9379
32 1 -0.2805 -5.5230 0.8959
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261313916.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:33
Heat of formation + Delta-G solvation = -61.924280 kcal
Electronic energy + Delta-G solvation = -13462.763690 eV
Core-core repulsion = 11229.584483 eV
Total energy + Delta-G solvation = -2233.179207 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-38.89324 -35.81291 -33.75435 -31.90745 -30.98150 -27.93681 -25.15230 -23.71059
-21.55225 -20.27197 -18.80872 -16.86664 -16.26388 -15.71944 -14.83996 -14.48315
-14.27508 -13.82826 -12.91013 -12.50290 -12.29698 -11.97210 -11.69028 -11.50420
-10.91934 -10.78172 -10.55893 -10.47371 -10.25233 -10.01728 -9.63338 -9.17680
-8.89720 -8.78095 -8.27858 -8.16629 -5.85562 -3.86655 3.36909 3.44149
3.47395 4.40711 4.55320 4.93480 5.09951 5.37791 5.42427 5.49189
5.63803 5.71476 5.87662 5.95253 6.08919 6.14578 6.20323 6.46755
6.69225 6.77526 6.88559 7.15809 7.23840 7.38423 7.58490 7.90256
8.12764 8.26768 8.37802 8.61796 9.23354 9.75081 11.25503
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.043884 B = 0.010367 C = 0.008925
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 637.899449 B = 2700.193487 C = 3136.461538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.055 3.945
3 Si 0.885 3.115
4 H -0.274 1.274
5 H -0.285 1.285
6 H -0.285 1.285
7 C -0.514 4.514
8 H 0.053 0.947
9 C 0.038 3.962
10 C -0.069 4.069
11 H 0.054 0.946
12 C -0.111 4.111
13 C 0.061 3.939
14 N -0.685 5.685
15 C 0.064 3.936
16 C -0.143 4.143
17 C 0.120 3.880
18 H 0.047 0.953
19 O -0.554 6.554
20 H 0.257 0.743
21 H 0.012 0.988
22 H 0.031 0.969
23 H 0.085 0.915
24 H 0.057 0.943
25 H 0.032 0.968
26 H 0.058 0.942
27 H 0.336 0.664
28 H 0.054 0.946
29 H 0.042 0.958
30 H 0.054 0.946
31 H 0.064 0.936
32 H 0.355 0.645
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.795 -11.686 -0.586 13.531
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.145 4.145
3 Si 0.714 3.286
4 H -0.199 1.199
5 H -0.212 1.212
6 H -0.212 1.212
7 C -0.553 4.553
8 H 0.071 0.929
9 C 0.001 3.999
10 C -0.088 4.088
11 H 0.072 0.928
12 C -0.149 4.149
13 C -0.067 4.067
14 N -0.315 5.315
15 C -0.067 4.067
16 C -0.182 4.182
17 C 0.061 3.939
18 H 0.065 0.935
19 O -0.357 6.357
20 H 0.067 0.933
21 H 0.031 0.969
22 H 0.050 0.950
23 H 0.103 0.897
24 H 0.076 0.924
25 H 0.051 0.949
26 H 0.077 0.923
27 H 0.153 0.847
28 H 0.073 0.927
29 H 0.060 0.940
30 H 0.073 0.927
31 H 0.083 0.917
32 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges 6.213 -10.898 -0.727 12.565
hybrid contribution 1.171 0.385 0.350 1.281
sum 7.384 -10.513 -0.377 12.853
Atomic orbital electron populations
1.70009 1.05936 1.26033 1.51292 1.25017 0.94770 0.98935 0.95816
0.86648 0.80091 0.84436 0.77465 1.19906 1.21170 1.21175 1.21371
0.92785 0.91378 1.49752 0.92923 1.18906 0.93335 0.89622 0.97987
1.20966 0.97508 0.94386 0.95948 0.92755 1.20619 0.95939 1.00055
0.98308 1.20998 0.98301 0.87558 0.99866 1.59972 1.48937 1.07240
1.15332 1.21602 0.96435 0.99913 0.88701 1.22730 0.95857 0.99316
1.00313 1.21655 0.83709 0.95059 0.93465 0.93486 1.86887 1.32090
1.36109 1.80620 0.93312 0.96913 0.95037 0.89699 0.92436 0.94937
0.92326 0.84674 0.92750 0.94019 0.92747 0.91719 0.80039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.89 13.29 55.43 0.74 -27.15 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16
4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16
5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
7 C -0.51 -14.90 8.16 -34.44 -0.28 -15.18 16
8 H 0.05 1.47 7.22 -52.49 -0.38 1.09 16
9 C 0.04 1.05 3.87 -27.88 -0.11 0.95 16
10 C -0.07 -1.51 1.75 -91.10 -0.16 -1.67 16
11 H 0.05 1.21 7.17 -51.93 -0.37 0.84 16
12 C -0.11 -2.14 4.85 -29.32 -0.14 -2.28 16
13 C 0.06 0.93 5.80 -6.70 -0.04 0.89 16
14 N -0.68 -9.34 6.41 -118.14 -0.76 -10.10 16
15 C 0.06 0.87 5.88 -4.67 -0.03 0.84 16
16 C -0.14 -2.15 5.71 -25.50 -0.15 -2.29 16
17 C 0.12 2.25 2.88 -27.32 -0.08 2.17 16
18 H 0.05 0.90 7.38 -51.93 -0.38 0.51 16
19 O -0.55 -11.03 11.28 -35.23 -0.40 -11.42 16
20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
22 H 0.03 0.95 7.03 -51.93 -0.37 0.59 16
23 H 0.08 1.78 6.66 -51.93 -0.35 1.43 16
24 H 0.06 1.11 7.59 -51.93 -0.39 0.72 16
25 H 0.03 0.51 7.24 -51.93 -0.38 0.13 16
26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
27 H 0.34 3.65 8.89 -39.29 -0.35 3.30 16
28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.04 0.61 6.51 -51.93 -0.34 0.27 16
30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
32 H 0.36 5.13 9.04 45.56 0.41 5.54 16
LS Contribution 249.94 15.07 3.77 3.77
Total: -1.00 -32.57 249.94 -6.89 -39.46
By element:
Atomic # 1 Polarization: 7.46 SS G_CDS: -4.14 Total: 3.32 kcal
Atomic # 6 Polarization: -13.96 SS G_CDS: -1.08 Total: -15.04 kcal
Atomic # 7 Polarization: -37.23 SS G_CDS: -0.02 Total: -37.25 kcal
Atomic # 8 Polarization: -11.03 SS G_CDS: -0.40 Total: -11.42 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 3.77 Total: 3.77 kcal
Total: -32.57 -6.89 -39.46 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261313916.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.466 kcal
(2) G-P(sol) polarization free energy of solvation -32.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.034 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.924 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds