Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00140 * 2 1 4 4 H 1.48504 * 109.46693 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47159 * 300.00269 * 3 2 1 6 6 H 1.48500 * 109.46771 * 60.00749 * 3 2 1 7 7 C 1.37878 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47056 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.57356 * 55.24680 * 10 9 7 12 12 C 1.54507 * 109.57177 * 294.99527 * 10 9 7 13 13 C 1.45861 * 111.59474 * 162.99980 * 12 10 9 14 14 N 1.47808 * 112.91973 * 61.32903 * 13 12 10 15 15 C 1.44276 * 109.45181 * 276.74376 * 14 13 12 16 16 C 1.54063 * 111.98188 * 96.43878 * 15 14 13 17 17 C 1.50459 * 109.57216 * 175.63416 * 10 9 7 18 18 H 1.08999 * 108.77441 * 91.04913 * 17 10 9 19 19 O 1.42900 * 108.77182 * 332.75453 * 17 10 9 20 20 H 0.97006 * 119.99619 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47338 * 59.99189 * 9 7 2 22 22 H 1.08999 * 109.46827 * 299.99913 * 9 7 2 23 23 H 1.09000 * 109.05750 * 42.45604 * 12 10 9 24 24 H 1.08996 * 109.05731 * 283.54658 * 12 10 9 25 25 H 1.09004 * 108.79829 * 300.44578 * 13 12 10 26 26 H 1.08997 * 108.70749 * 182.15364 * 13 12 10 27 27 H 1.00896 * 111.00108 * 153.88114 * 14 13 12 28 28 H 1.09005 * 108.97294 * 217.07838 * 15 14 13 29 29 H 1.08990 * 108.98141 * 335.79204 * 15 14 13 30 30 H 1.09000 * 108.92169 * 79.62944 * 16 15 14 31 31 H 1.08999 * 108.91958 * 198.18408 * 16 15 14 32 32 H 0.96705 * 113.99558 * 179.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 1 2.9268 -3.5597 0.8429 12 6 3.0501 -3.6553 -1.3203 13 6 4.2570 -4.4677 -1.2168 14 7 3.9709 -5.8903 -0.9356 15 6 3.7766 -6.0701 0.4827 16 6 2.2849 -6.0505 0.8675 17 6 1.4981 -4.9638 0.1053 18 1 1.2814 -5.3273 -0.8992 19 8 0.2633 -4.7309 0.7857 20 1 -0.4850 0.8401 0.0004 21 1 0.6245 -2.5563 -0.8919 22 1 0.6240 -2.5575 0.8880 23 1 3.3309 -2.6298 -1.5605 24 1 2.4241 -4.0483 -2.1213 25 1 4.8805 -4.0701 -0.4160 26 1 4.8062 -4.3990 -2.1558 27 1 4.7129 -6.4827 -1.2768 28 1 4.2072 -7.0260 0.7811 29 1 4.2906 -5.2699 1.0151 30 1 1.8494 -7.0244 0.6439 31 1 2.1985 -5.8640 1.9379 32 1 -0.2805 -5.5230 0.8959 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261313916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -61.924280 kcal Electronic energy + Delta-G solvation = -13462.763690 eV Core-core repulsion = 11229.584483 eV Total energy + Delta-G solvation = -2233.179207 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.89324 -35.81291 -33.75435 -31.90745 -30.98150 -27.93681 -25.15230 -23.71059 -21.55225 -20.27197 -18.80872 -16.86664 -16.26388 -15.71944 -14.83996 -14.48315 -14.27508 -13.82826 -12.91013 -12.50290 -12.29698 -11.97210 -11.69028 -11.50420 -10.91934 -10.78172 -10.55893 -10.47371 -10.25233 -10.01728 -9.63338 -9.17680 -8.89720 -8.78095 -8.27858 -8.16629 -5.85562 -3.86655 3.36909 3.44149 3.47395 4.40711 4.55320 4.93480 5.09951 5.37791 5.42427 5.49189 5.63803 5.71476 5.87662 5.95253 6.08919 6.14578 6.20323 6.46755 6.69225 6.77526 6.88559 7.15809 7.23840 7.38423 7.58490 7.90256 8.12764 8.26768 8.37802 8.61796 9.23354 9.75081 11.25503 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043884 B = 0.010367 C = 0.008925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.899449 B = 2700.193487 C = 3136.461538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.055 3.945 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.038 3.962 10 C -0.069 4.069 11 H 0.054 0.946 12 C -0.111 4.111 13 C 0.061 3.939 14 N -0.685 5.685 15 C 0.064 3.936 16 C -0.143 4.143 17 C 0.120 3.880 18 H 0.047 0.953 19 O -0.554 6.554 20 H 0.257 0.743 21 H 0.012 0.988 22 H 0.031 0.969 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.336 0.664 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 -11.686 -0.586 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.001 3.999 10 C -0.088 4.088 11 H 0.072 0.928 12 C -0.149 4.149 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.067 4.067 16 C -0.182 4.182 17 C 0.061 3.939 18 H 0.065 0.935 19 O -0.357 6.357 20 H 0.067 0.933 21 H 0.031 0.969 22 H 0.050 0.950 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.213 -10.898 -0.727 12.565 hybrid contribution 1.171 0.385 0.350 1.281 sum 7.384 -10.513 -0.377 12.853 Atomic orbital electron populations 1.70009 1.05936 1.26033 1.51292 1.25017 0.94770 0.98935 0.95816 0.86648 0.80091 0.84436 0.77465 1.19906 1.21170 1.21175 1.21371 0.92785 0.91378 1.49752 0.92923 1.18906 0.93335 0.89622 0.97987 1.20966 0.97508 0.94386 0.95948 0.92755 1.20619 0.95939 1.00055 0.98308 1.20998 0.98301 0.87558 0.99866 1.59972 1.48937 1.07240 1.15332 1.21602 0.96435 0.99913 0.88701 1.22730 0.95857 0.99316 1.00313 1.21655 0.83709 0.95059 0.93465 0.93486 1.86887 1.32090 1.36109 1.80620 0.93312 0.96913 0.95037 0.89699 0.92436 0.94937 0.92326 0.84674 0.92750 0.94019 0.92747 0.91719 0.80039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.89 13.29 55.43 0.74 -27.15 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.51 -14.90 8.16 -34.44 -0.28 -15.18 16 8 H 0.05 1.47 7.22 -52.49 -0.38 1.09 16 9 C 0.04 1.05 3.87 -27.88 -0.11 0.95 16 10 C -0.07 -1.51 1.75 -91.10 -0.16 -1.67 16 11 H 0.05 1.21 7.17 -51.93 -0.37 0.84 16 12 C -0.11 -2.14 4.85 -29.32 -0.14 -2.28 16 13 C 0.06 0.93 5.80 -6.70 -0.04 0.89 16 14 N -0.68 -9.34 6.41 -118.14 -0.76 -10.10 16 15 C 0.06 0.87 5.88 -4.67 -0.03 0.84 16 16 C -0.14 -2.15 5.71 -25.50 -0.15 -2.29 16 17 C 0.12 2.25 2.88 -27.32 -0.08 2.17 16 18 H 0.05 0.90 7.38 -51.93 -0.38 0.51 16 19 O -0.55 -11.03 11.28 -35.23 -0.40 -11.42 16 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.95 7.03 -51.93 -0.37 0.59 16 23 H 0.08 1.78 6.66 -51.93 -0.35 1.43 16 24 H 0.06 1.11 7.59 -51.93 -0.39 0.72 16 25 H 0.03 0.51 7.24 -51.93 -0.38 0.13 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.34 3.65 8.89 -39.29 -0.35 3.30 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.61 6.51 -51.93 -0.34 0.27 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.36 5.13 9.04 45.56 0.41 5.54 16 LS Contribution 249.94 15.07 3.77 3.77 Total: -1.00 -32.57 249.94 -6.89 -39.46 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.14 Total: 3.32 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.08 Total: -15.04 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.02 Total: -37.25 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.40 Total: -11.42 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.57 -6.89 -39.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261313916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.466 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds