Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99673 * 2 1 4 4 H 1.48496 * 109.46657 * 239.99760 * 3 2 1 5 5 H 1.48497 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47163 * 119.99658 * 3 2 1 7 7 C 1.37874 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99909 * 185.48776 * 7 2 1 9 9 C 1.50697 * 120.00084 * 5.48552 * 7 2 1 10 10 H 1.09002 * 109.47307 * 5.16473 * 9 7 2 11 11 C 1.53002 * 109.47639 * 245.16624 * 9 7 2 12 12 O 1.42906 * 109.47063 * 63.49999 * 11 9 7 13 13 C 1.53003 * 109.47159 * 125.16304 * 9 7 2 14 14 H 1.08997 * 109.49942 * 59.92124 * 13 9 7 15 15 C 1.53206 * 109.49056 * 299.82252 * 13 9 7 16 16 C 1.53117 * 109.11232 * 182.42185 * 15 13 9 17 17 C 1.53032 * 109.31151 * 57.63856 * 16 15 13 18 18 N 1.46839 * 109.52377 * 300.79814 * 17 16 15 19 19 C 1.46846 * 111.19998 * 61.74253 * 18 17 16 20 20 H 0.96995 * 120.00226 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.47297 * 183.50322 * 11 9 7 22 22 H 1.09007 * 109.46433 * 303.50471 * 11 9 7 23 23 H 0.96695 * 113.99672 * 180.02562 * 12 11 9 24 24 H 1.09000 * 109.57456 * 62.51602 * 15 13 9 25 25 H 1.08994 * 109.51294 * 302.29369 * 15 13 9 26 26 H 1.09005 * 109.50208 * 297.67498 * 16 15 13 27 27 H 1.09002 * 109.50024 * 177.60484 * 16 15 13 28 28 H 1.09000 * 109.46380 * 60.81862 * 17 16 15 29 29 H 1.09011 * 109.46046 * 180.78151 * 17 16 15 30 30 H 1.00901 * 111.00064 * 297.64189 * 18 17 16 31 31 H 1.09003 * 109.45872 * 58.27580 * 19 18 17 32 32 H 1.08997 * 109.46286 * 178.24279 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0809 -1.1960 0.0900 9 6 1.2564 -2.4962 -0.1236 10 1 0.1993 -2.2929 -0.2948 11 6 1.4182 -3.3025 1.1665 12 8 0.8202 -2.5903 2.2516 13 6 1.8186 -3.2973 -1.2997 14 1 2.8761 -3.4996 -1.1297 15 6 1.6527 -2.4922 -2.5925 16 6 2.1624 -3.3260 -3.7713 17 6 1.3930 -4.6477 -3.8264 18 7 1.5844 -5.3798 -2.5680 19 6 1.0592 -4.6199 -1.4265 20 1 -0.4850 0.8400 -0.0004 21 1 0.9295 -4.2702 1.0539 22 1 2.4785 -3.4524 1.3707 23 1 0.8858 -3.0436 3.1032 24 1 2.2276 -1.5687 -2.5240 25 1 0.5991 -2.2563 -2.7418 26 1 3.2254 -3.5288 -3.6409 27 1 2.0081 -2.7760 -4.6997 28 1 0.3319 -4.4445 -3.9707 29 1 1.7636 -5.2493 -4.6566 30 1 2.5561 -5.6141 -2.4302 31 1 -0.0004 -4.4169 -1.5820 32 1 1.1873 -5.2012 -0.5134 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261323341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = -92.705472 kcal Electronic energy + Delta-G solvation = -13519.698253 eV Core-core repulsion = 11285.184274 eV Total energy + Delta-G solvation = -2234.513980 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.00614 -37.55273 -35.26253 -33.26783 -32.30369 -29.18764 -26.81848 -24.14783 -24.06480 -21.56009 -20.77878 -18.54190 -18.01939 -16.69042 -16.46646 -15.83241 -15.50288 -15.02120 -14.81501 -14.49092 -13.78460 -13.40243 -13.12820 -12.98011 -12.85632 -12.61962 -12.36313 -12.04096 -12.02711 -11.54829 -11.25761 -11.04747 -10.88859 -10.49930 -10.35674 -9.14929 -8.03899 -6.09546 1.37716 1.38674 1.45615 2.44711 3.25444 3.49436 3.77968 4.03089 4.18742 4.32174 4.34204 4.52680 4.61614 4.66436 4.75282 4.79549 4.99105 5.08501 5.12097 5.21272 5.31445 5.46491 5.50981 5.68936 5.71302 5.93656 6.15041 6.40323 6.59620 7.00451 7.34690 7.53330 9.04735 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.012961 C = 0.010219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.117840 B = 2159.804606 C = 2739.253278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.040 0.960 9 C 0.030 3.970 10 H 0.031 0.969 11 C 0.090 3.910 12 O -0.579 6.579 13 C -0.096 4.096 14 H 0.053 0.947 15 C -0.093 4.093 16 C -0.149 4.149 17 C 0.060 3.940 18 N -0.684 5.684 19 C 0.066 3.934 20 H 0.255 0.745 21 H 0.040 0.960 22 H 0.028 0.972 23 H 0.372 0.628 24 H 0.041 0.959 25 H 0.029 0.971 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.345 0.655 31 H 0.051 0.949 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -8.773 -4.334 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.177 4.177 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.010 3.990 10 H 0.049 0.951 11 C 0.012 3.988 12 O -0.384 6.384 13 C -0.116 4.116 14 H 0.071 0.929 15 C -0.131 4.131 16 C -0.188 4.188 17 C -0.070 4.070 18 N -0.312 5.312 19 C -0.064 4.064 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.218 0.782 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.163 0.837 31 H 0.070 0.930 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.422 -8.622 -4.910 10.496 hybrid contribution 1.007 1.699 0.810 2.134 sum 4.429 -6.924 -4.101 9.185 Atomic orbital electron populations 1.70063 1.07228 1.26555 1.52133 1.25571 0.95359 1.01933 0.94886 0.85925 0.78624 0.80274 0.78686 1.19461 1.21333 1.20076 1.21083 0.92305 0.91963 1.49006 0.94131 1.18909 0.97518 0.92899 0.89651 0.95074 1.22440 0.94405 0.93122 0.88828 1.86773 1.81532 1.50752 1.19344 1.21702 0.98784 0.95598 0.95557 0.92863 1.21299 0.99235 0.98107 0.94478 1.22265 1.00356 0.98111 0.98111 1.22032 0.99981 0.92409 0.92547 1.60771 1.24347 1.43882 1.02199 1.22070 0.98214 0.92181 0.93925 0.93592 0.94247 0.95420 0.78220 0.94019 0.95184 0.91581 0.91170 0.92156 0.88605 0.83676 0.92999 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.41 12.64 21.45 0.27 -56.14 16 2 C 0.02 1.21 5.45 84.65 0.46 1.67 16 3 Si 0.94 45.44 29.54 68.60 2.03 47.46 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.51 -28.15 6.84 25.60 0.18 -27.97 16 8 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16 9 C 0.03 1.47 1.93 -11.54 -0.02 1.45 16 10 H 0.03 1.81 6.96 -2.39 -0.02 1.79 16 11 C 0.09 3.87 6.18 71.98 0.44 4.31 16 12 O -0.58 -26.92 13.38 -148.98 -1.99 -28.91 16 13 C -0.10 -3.84 1.91 -10.71 -0.02 -3.86 16 14 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.09 -3.78 5.00 30.70 0.15 -3.63 16 16 C -0.15 -4.44 6.07 30.64 0.19 -4.25 16 17 C 0.06 1.59 6.55 86.33 0.57 2.15 16 18 N -0.68 -19.17 6.87 -514.03 -3.53 -22.69 16 19 C 0.07 2.23 5.46 86.32 0.47 2.70 16 20 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 21 H 0.04 1.47 6.27 -2.39 -0.01 1.45 16 22 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.37 12.34 9.12 -74.06 -0.68 11.66 16 24 H 0.04 1.90 7.33 -2.39 -0.02 1.88 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.35 8.49 8.86 -89.69 -0.79 7.69 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 2.49 6.40 -2.39 -0.02 2.48 16 Total: -1.00 -66.54 255.33 -1.17 -67.71 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.36 Total: 19.99 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 2.42 Total: -27.42 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -3.26 Total: -78.83 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.99 Total: -28.91 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.54 -1.17 -67.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.996 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds