Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.53404 * 2 1 4 4 C 1.53041 * 109.56049 * 239.92541 * 2 1 3 5 5 N 1.46848 * 109.57457 * 180.94378 * 4 2 1 6 6 C 1.46843 * 111.19905 * 61.71491 * 5 4 2 7 7 C 1.53038 * 109.52208 * 298.25779 * 6 5 4 8 8 C 1.53113 * 109.28012 * 59.17664 * 7 6 5 9 9 O 1.42900 * 109.52475 * 62.31799 * 8 7 6 10 10 C 1.50706 * 109.52144 * 182.44133 * 8 7 6 11 11 H 1.08003 * 119.99806 * 123.58506 * 10 8 7 12 12 C 1.37870 * 119.99981 * 303.58340 * 10 8 7 13 13 N 1.31515 * 120.00002 * 351.43216 * 12 10 8 14 14 Si 1.86800 * 119.99916 * 171.43756 * 12 10 8 15 15 H 1.48498 * 109.47168 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47491 * 120.00041 * 14 12 10 17 17 H 1.48510 * 109.46784 * 239.99753 * 14 12 10 18 18 H 1.09000 * 109.47573 * 299.90386 * 1 2 3 19 19 H 1.09002 * 109.47358 * 59.90304 * 1 2 3 20 20 H 1.08999 * 109.47269 * 179.90397 * 1 2 3 21 21 H 1.09008 * 109.46914 * 180.09423 * 3 2 1 22 22 H 1.08994 * 109.46908 * 300.09414 * 3 2 1 23 23 H 1.08998 * 109.47078 * 60.10020 * 3 2 1 24 24 H 1.09008 * 109.45976 * 60.89810 * 4 2 1 25 25 H 1.08993 * 109.40374 * 300.95685 * 4 2 1 26 26 H 1.00907 * 110.99402 * 185.80905 * 5 4 2 27 27 H 1.09000 * 109.46318 * 178.23567 * 6 5 4 28 28 H 1.09007 * 109.45097 * 58.26442 * 6 5 4 29 29 H 1.08998 * 109.50163 * 299.23548 * 7 6 5 30 30 H 1.08997 * 109.50270 * 179.11873 * 7 6 5 31 31 H 0.96695 * 113.99956 * 53.99149 * 9 8 7 32 32 H 0.96998 * 120.00579 * 5.48708 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0415 1.4419 0.0000 4 6 2.0423 -0.7227 -1.2479 5 7 3.5106 -0.7426 -1.2369 6 6 4.0230 -1.4743 -0.0714 7 6 3.5710 -0.7733 1.2117 8 6 2.0412 -0.7238 1.2488 9 8 1.5208 -2.0544 1.2762 10 6 1.5910 0.0184 2.4808 11 1 0.9480 0.8810 2.3867 12 6 2.0000 -0.4038 3.7279 13 7 2.6401 -1.5452 3.8584 14 14 1.6449 0.6453 5.2321 15 1 0.9181 1.8726 4.8192 16 1 0.8109 -0.1264 6.1882 17 1 2.9241 1.0239 5.8847 18 1 -0.3634 0.5123 0.8908 19 1 -0.3634 0.5153 -0.8891 20 1 -0.3634 -1.0276 -0.0017 21 1 3.1316 1.4407 -0.0017 22 1 1.6774 1.9566 -0.8891 23 1 1.6802 1.9556 0.8909 24 1 1.6929 -0.2009 -2.1389 25 1 1.6653 -1.7453 -1.2546 26 1 3.8734 -1.1299 -2.0951 27 1 5.1121 -1.4985 -0.1078 28 1 3.6364 -2.4934 -0.0839 29 1 3.9685 0.2415 1.2313 30 1 3.9383 -1.3254 2.0768 31 1 1.8786 -2.6020 1.9882 32 1 2.8947 -2.0514 3.0711 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300779906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = -53.172088 kcal Electronic energy + Delta-G solvation = -14281.466972 eV Core-core repulsion = 12048.667289 eV Total energy + Delta-G solvation = -2232.799683 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.12469 -34.89542 -33.14436 -32.09668 -29.54141 -26.23850 -25.69361 -24.95159 -21.72806 -20.80095 -17.92240 -17.18141 -15.67345 -14.69015 -14.50941 -14.02799 -13.75659 -13.55956 -12.79320 -12.27717 -11.92730 -11.50148 -11.16293 -11.05683 -10.97577 -10.89263 -10.60679 -10.37378 -10.14563 -10.09723 -9.83873 -9.74963 -8.87398 -8.41037 -8.03761 -7.63375 -6.34795 -4.16865 3.41248 3.43068 3.57524 4.46512 4.80706 5.17034 5.50678 5.73292 5.86830 6.01196 6.02446 6.11115 6.31447 6.32750 6.39116 6.50751 6.56187 6.74920 6.81659 6.91194 7.01516 7.14069 7.17421 7.36091 7.53509 7.67603 7.90461 8.12658 8.39401 8.74246 9.19000 9.53229 10.89801 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042177 B = 0.015103 C = 0.013519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.705239 B = 1853.440030 C = 2070.604026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.035 4.035 3 C -0.120 4.120 4 C 0.070 3.930 5 N -0.686 5.686 6 C 0.060 3.940 7 C -0.147 4.147 8 C 0.245 3.755 9 O -0.593 6.593 10 C -0.599 4.599 11 H 0.058 0.942 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 1.071 2.929 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.287 1.287 18 H 0.062 0.938 19 H 0.030 0.970 20 H 0.051 0.949 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.327 0.673 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.363 0.637 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 1.810 -6.512 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.035 4.035 3 C -0.177 4.177 4 C -0.059 4.059 5 N -0.316 5.316 6 C -0.069 4.069 7 C -0.185 4.185 8 C 0.207 3.793 9 O -0.401 6.401 10 C -0.637 4.637 11 H 0.076 0.924 12 C -0.177 4.177 13 N -0.559 5.559 14 Si 0.900 3.100 15 H -0.215 1.215 16 H -0.214 1.214 17 H -0.213 1.213 18 H 0.081 0.919 19 H 0.049 0.951 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.143 0.857 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.212 0.788 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.361 2.684 -5.104 5.778 hybrid contribution 0.067 -1.187 -1.413 1.846 sum 0.427 1.497 -6.517 6.700 Atomic orbital electron populations 1.21639 0.95237 1.01267 1.00023 1.20305 0.94730 0.95138 0.93355 1.21682 1.01537 0.94763 0.99746 1.21964 0.87179 0.98685 0.98107 1.60322 1.08655 1.58011 1.04618 1.21953 0.97751 0.95194 0.92047 1.22453 1.00166 1.00840 0.95059 1.18845 0.87753 0.80224 0.92525 1.86286 1.71537 1.26282 1.56017 1.22523 1.33021 1.15745 0.92426 0.92375 1.25805 0.94090 0.96501 1.01304 1.70956 1.39685 1.12181 1.33086 0.83517 0.76391 0.75078 0.75057 1.21473 1.21420 1.21324 0.91939 0.95124 0.92973 0.92097 0.94975 0.92375 0.92530 0.95221 0.85748 0.92595 0.95683 0.91700 0.90722 0.78803 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.10 37.15 0.30 -2.26 16 2 C -0.03 -0.74 0.36 -154.43 -0.06 -0.80 16 3 C -0.12 -2.44 7.75 37.16 0.29 -2.15 16 4 C 0.07 1.34 5.13 -3.83 -0.02 1.32 16 5 N -0.69 -12.40 6.13 -113.81 -0.70 -13.10 16 6 C 0.06 1.17 6.42 -3.84 -0.02 1.15 16 7 C -0.15 -3.38 4.31 -26.65 -0.11 -3.50 16 8 C 0.25 5.95 0.13 -91.65 -0.01 5.94 16 9 O -0.59 -15.07 11.07 -35.23 -0.39 -15.46 16 10 C -0.60 -16.03 6.81 -34.44 -0.23 -16.27 16 11 H 0.06 1.58 5.73 -52.48 -0.30 1.28 16 12 C 0.03 0.71 5.17 -17.82 -0.09 0.61 16 13 N -0.92 -25.77 12.67 55.43 0.70 -25.07 16 14 Si 1.07 24.67 29.91 -169.99 -5.08 19.58 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H 0.06 1.37 6.71 -51.93 -0.35 1.02 16 19 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 20 H 0.05 1.12 7.63 -51.93 -0.40 0.72 16 21 H 0.06 1.26 6.02 -51.92 -0.31 0.95 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.24 6.56 -51.93 -0.34 0.90 16 24 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 25 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 26 H 0.33 4.96 8.90 -39.29 -0.35 4.61 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.51 7.76 -51.93 -0.40 0.10 16 29 H 0.06 1.54 6.59 -51.93 -0.34 1.20 16 30 H 0.07 1.86 5.42 -51.93 -0.28 1.58 16 31 H 0.36 9.33 6.27 45.56 0.29 9.61 16 32 H 0.27 7.30 3.46 -40.82 -0.14 7.16 16 LS Contribution 236.64 15.07 3.57 3.57 Total: -1.00 -28.33 236.64 -5.69 -34.02 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -3.82 Total: 12.42 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 0.04 Total: -15.96 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.00 Total: -38.17 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.39 Total: -15.46 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.33 -5.69 -34.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300779906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.152 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds