Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.53404 * 2 1 4 4 C 1.53041 * 109.56049 * 239.92541 * 2 1 3 5 5 N 1.46848 * 109.57457 * 180.94378 * 4 2 1 6 6 C 1.46843 * 111.19905 * 61.71491 * 5 4 2 7 7 C 1.53038 * 109.52208 * 298.25779 * 6 5 4 8 8 C 1.53113 * 109.28012 * 59.17664 * 7 6 5 9 9 O 1.42900 * 109.52475 * 62.31799 * 8 7 6 10 10 C 1.50706 * 109.52144 * 182.44133 * 8 7 6 11 11 H 1.08003 * 119.99806 * 123.58506 * 10 8 7 12 12 C 1.37870 * 119.99981 * 303.58340 * 10 8 7 13 13 N 1.31515 * 120.00002 * 351.43216 * 12 10 8 14 14 Si 1.86800 * 119.99916 * 171.43756 * 12 10 8 15 15 H 1.48498 * 109.47168 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47491 * 120.00041 * 14 12 10 17 17 H 1.48510 * 109.46784 * 239.99753 * 14 12 10 18 18 H 1.09000 * 109.47573 * 299.90386 * 1 2 3 19 19 H 1.09002 * 109.47358 * 59.90304 * 1 2 3 20 20 H 1.08999 * 109.47269 * 179.90397 * 1 2 3 21 21 H 1.09008 * 109.46914 * 180.09423 * 3 2 1 22 22 H 1.08994 * 109.46908 * 300.09414 * 3 2 1 23 23 H 1.08998 * 109.47078 * 60.10020 * 3 2 1 24 24 H 1.09008 * 109.45976 * 60.89810 * 4 2 1 25 25 H 1.08993 * 109.40374 * 300.95685 * 4 2 1 26 26 H 1.00907 * 110.99402 * 185.80905 * 5 4 2 27 27 H 1.09000 * 109.46318 * 178.23567 * 6 5 4 28 28 H 1.09007 * 109.45097 * 58.26442 * 6 5 4 29 29 H 1.08998 * 109.50163 * 299.23548 * 7 6 5 30 30 H 1.08997 * 109.50270 * 179.11873 * 7 6 5 31 31 H 0.96695 * 113.99956 * 53.99149 * 9 8 7 32 32 H 0.96998 * 120.00579 * 5.48708 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0415 1.4419 0.0000 4 6 2.0423 -0.7227 -1.2479 5 7 3.5106 -0.7426 -1.2369 6 6 4.0230 -1.4743 -0.0714 7 6 3.5710 -0.7733 1.2117 8 6 2.0412 -0.7238 1.2488 9 8 1.5208 -2.0544 1.2762 10 6 1.5910 0.0184 2.4808 11 1 0.9480 0.8810 2.3867 12 6 2.0000 -0.4038 3.7279 13 7 2.6401 -1.5452 3.8584 14 14 1.6449 0.6453 5.2321 15 1 0.9181 1.8726 4.8192 16 1 0.8109 -0.1264 6.1882 17 1 2.9241 1.0239 5.8847 18 1 -0.3634 0.5123 0.8908 19 1 -0.3634 0.5153 -0.8891 20 1 -0.3634 -1.0276 -0.0017 21 1 3.1316 1.4407 -0.0017 22 1 1.6774 1.9566 -0.8891 23 1 1.6802 1.9556 0.8909 24 1 1.6929 -0.2009 -2.1389 25 1 1.6653 -1.7453 -1.2546 26 1 3.8734 -1.1299 -2.0951 27 1 5.1121 -1.4985 -0.1078 28 1 3.6364 -2.4934 -0.0839 29 1 3.9685 0.2415 1.2313 30 1 3.9383 -1.3254 2.0768 31 1 1.8786 -2.6020 1.9882 32 1 2.8947 -2.0514 3.0711 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300779906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = -73.962921 kcal Electronic energy + Delta-G solvation = -14282.368530 eV Core-core repulsion = 12048.667289 eV Total energy + Delta-G solvation = -2233.701242 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.87631 -36.71530 -34.78526 -34.14842 -31.31537 -27.88207 -27.60651 -26.65234 -23.53268 -22.52146 -19.84840 -19.00757 -17.24643 -16.58353 -16.28863 -15.88763 -15.43040 -15.29015 -14.46492 -14.05780 -13.73329 -13.28585 -12.85724 -12.79775 -12.76823 -12.51538 -12.38079 -12.18715 -11.95940 -11.92444 -11.58856 -11.48539 -10.71613 -10.40990 -9.86873 -9.27862 -8.46229 -6.30290 1.53290 1.59483 1.76520 2.55754 3.10290 3.35221 3.78933 4.07658 4.17840 4.31761 4.35963 4.49971 4.63710 4.73583 4.80105 4.86149 4.95616 5.04200 5.12406 5.16357 5.31323 5.38512 5.48527 5.59200 5.76500 6.08116 6.09054 6.28413 6.60890 6.66630 7.16580 7.45954 8.78641 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042177 B = 0.015103 C = 0.013519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.705239 B = 1853.440030 C = 2070.604026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 C -0.112 4.112 4 C 0.075 3.925 5 N -0.680 5.680 6 C 0.068 3.932 7 C -0.140 4.140 8 C 0.234 3.766 9 O -0.598 6.598 10 C -0.609 4.609 11 H 0.048 0.952 12 C -0.019 4.019 13 N -0.936 5.936 14 Si 1.110 2.890 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.281 1.281 18 H 0.041 0.959 19 H 0.064 0.936 20 H 0.036 0.964 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.087 0.913 25 H 0.016 0.984 26 H 0.349 0.651 27 H 0.078 0.922 28 H 0.017 0.983 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.357 0.643 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 2.617 -7.884 8.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.044 4.044 3 C -0.169 4.169 4 C -0.054 4.054 5 N -0.312 5.312 6 C -0.062 4.062 7 C -0.179 4.179 8 C 0.195 3.805 9 O -0.406 6.406 10 C -0.647 4.647 11 H 0.067 0.933 12 C -0.217 4.217 13 N -0.581 5.581 14 Si 0.934 3.066 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.207 1.207 18 H 0.060 0.940 19 H 0.083 0.917 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.034 0.966 26 H 0.168 0.832 27 H 0.097 0.903 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.205 0.795 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.466 3.490 -6.511 7.402 hybrid contribution 0.021 -1.438 -1.016 1.761 sum 0.487 2.052 -7.527 7.817 Atomic orbital electron populations 1.21566 0.94881 1.00461 1.00692 1.20404 0.95197 0.95665 0.93107 1.21586 1.00996 0.94060 1.00243 1.21895 0.87688 0.97906 0.97937 1.60241 1.08075 1.57796 1.05088 1.21808 0.99066 0.94233 0.91074 1.22277 0.99316 1.00122 0.96180 1.19060 0.88594 0.79518 0.93279 1.86283 1.71830 1.26833 1.55631 1.22804 1.32569 1.15540 0.93795 0.93333 1.26935 0.93824 0.96905 1.04081 1.71016 1.40922 1.13025 1.33166 0.83000 0.76619 0.74329 0.72637 1.20158 1.21156 1.20680 0.93975 0.91690 0.94478 0.92766 0.92045 0.94252 0.89523 0.96616 0.83219 0.90323 0.96512 0.92793 0.93183 0.79481 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.10 71.98 0.58 -4.13 16 2 C -0.04 -1.78 0.36 -52.13 -0.02 -1.80 16 3 C -0.11 -4.31 7.75 71.98 0.56 -3.75 16 4 C 0.08 2.66 5.13 86.33 0.44 3.10 16 5 N -0.68 -22.54 6.13 -513.99 -3.15 -25.69 16 6 C 0.07 2.54 6.42 86.33 0.55 3.09 16 7 C -0.14 -6.45 4.31 30.64 0.13 -6.32 16 8 C 0.23 11.34 0.13 -11.46 0.00 11.33 16 9 O -0.60 -30.72 11.07 -148.98 -1.65 -32.37 16 10 C -0.61 -32.88 6.81 25.60 0.17 -32.71 16 11 H 0.05 2.66 5.73 -2.91 -0.02 2.64 16 12 C -0.02 -1.04 5.17 84.65 0.44 -0.61 16 13 N -0.94 -53.57 12.67 21.44 0.27 -53.30 16 14 Si 1.11 49.83 29.91 68.60 2.05 51.88 16 15 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H 0.04 1.81 6.71 -2.39 -0.02 1.80 16 19 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 20 H 0.04 1.55 7.63 -2.39 -0.02 1.53 16 21 H 0.05 2.14 6.02 -2.38 -0.01 2.13 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.04 1.63 6.56 -2.39 -0.02 1.62 16 24 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 25 H 0.02 0.60 7.76 -2.39 -0.02 0.58 16 26 H 0.35 9.25 8.90 -89.69 -0.80 8.45 16 27 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.02 0.66 7.76 -2.38 -0.02 0.64 16 29 H 0.05 2.55 6.59 -2.39 -0.02 2.54 16 30 H 0.05 2.53 5.42 -2.39 -0.01 2.52 16 31 H 0.36 18.85 6.27 -74.06 -0.46 18.39 16 32 H 0.26 14.78 3.46 -92.71 -0.32 14.46 16 Total: -1.00 -59.92 236.64 0.70 -59.22 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.31 Total: 32.04 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 2.86 Total: -31.78 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.88 Total: -78.98 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.65 Total: -32.37 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Total: -59.92 0.70 -59.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300779906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.740 kcal (2) G-P(sol) polarization free energy of solvation -59.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds