Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 120.00073 * 2 1 4 4 H 1.07998 * 119.99953 * 175.34411 * 3 2 1 5 5 C 1.38813 * 119.99979 * 355.34589 * 3 2 1 6 6 N 1.31617 * 120.00429 * 347.45751 * 5 3 2 7 7 Si 1.86807 * 119.99803 * 167.46285 * 5 3 2 8 8 H 1.48497 * 109.47289 * 94.96154 * 7 5 3 9 9 H 1.48503 * 109.46949 * 214.95623 * 7 5 3 10 10 H 1.48498 * 109.47343 * 334.95703 * 7 5 3 11 11 C 1.46493 * 119.99745 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.53846 * 187.72541 * 11 2 1 13 13 C 1.54889 * 110.48931 * 310.33913 * 11 2 1 14 14 C 1.54885 * 102.75268 * 156.62026 * 13 11 2 15 15 C 1.54262 * 104.19592 * 322.06036 * 14 13 11 16 16 C 1.53871 * 106.60024 * 23.60703 * 15 14 13 17 17 C 1.53002 * 110.03340 * 119.28808 * 16 15 14 18 18 O 1.42900 * 110.03419 * 240.66925 * 16 15 14 19 19 H 1.08990 * 109.47240 * 185.60196 * 1 2 3 20 20 H 1.09002 * 109.46555 * 305.60634 * 1 2 3 21 21 H 1.09002 * 109.47225 * 65.59962 * 1 2 3 22 22 H 0.96997 * 120.00555 * 180.02562 * 6 5 3 23 23 H 1.09004 * 110.75655 * 38.30151 * 13 11 2 24 24 H 1.09000 * 110.91598 * 275.01164 * 13 11 2 25 25 H 1.08994 * 110.49013 * 203.38077 * 14 13 11 26 26 H 1.09003 * 110.48641 * 80.73819 * 14 13 11 27 27 H 1.09008 * 110.03234 * 264.32558 * 15 14 13 28 28 H 1.08999 * 110.07929 * 142.91837 * 15 14 13 29 29 H 1.09000 * 109.47061 * 61.45768 * 17 16 15 30 30 H 1.08999 * 109.47136 * 181.45393 * 17 16 15 31 31 H 1.09000 * 109.46914 * 301.45346 * 17 16 15 32 32 H 0.96704 * 114.00086 * 297.90926 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2271 1.1874 0.0759 5 6 1.4591 2.3861 -0.0975 6 7 0.1871 2.3879 -0.4356 7 14 2.3352 3.9987 0.2509 8 1 2.8225 4.5830 -1.0244 9 1 1.3918 4.9443 0.9000 10 1 3.4876 3.7510 1.1542 11 6 2.1975 -1.2687 -0.0006 12 1 3.2646 -1.0943 0.1367 13 6 1.6552 -2.2083 1.1049 14 6 2.0612 -3.6116 0.5904 15 6 1.8542 -3.5294 -0.9360 16 6 1.9408 -2.0398 -1.3118 17 6 3.0962 -1.8120 -2.2886 18 8 0.7111 -1.6111 -1.9002 19 1 -0.3633 -1.0227 0.1003 20 1 -0.3632 0.5983 0.8356 21 1 -0.3634 0.4245 -0.9359 22 1 -0.2954 3.2265 -0.5042 23 1 0.5713 -2.1250 1.1853 24 1 2.1294 -1.9960 2.0632 25 1 1.4169 -4.3774 1.0221 26 1 3.1064 -3.8156 0.8232 27 1 0.8738 -3.9251 -1.2017 28 1 2.6346 -4.0902 -1.4503 29 1 2.9174 -2.3799 -3.2017 30 1 3.1654 -0.7510 -2.5284 31 1 4.0288 -2.1428 -1.8317 32 1 0.4885 -2.0678 -2.7230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306154931.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = -25.019382 kcal Electronic energy + Delta-G solvation = -13870.503580 eV Core-core repulsion = 11638.924690 eV Total energy + Delta-G solvation = -2231.578891 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.79740 -34.74842 -33.84322 -30.69999 -29.76726 -26.93287 -25.72552 -24.43793 -21.86389 -19.96291 -18.71246 -16.84328 -15.86493 -14.81844 -14.54179 -14.06744 -13.56979 -13.40657 -12.75053 -12.29128 -12.01101 -11.85853 -11.42073 -10.99162 -10.71599 -10.62777 -10.52254 -10.44353 -10.16611 -10.13362 -9.83759 -9.58160 -9.47056 -9.12605 -8.34053 -6.64694 -5.45379 -2.86701 3.46801 3.52828 3.54876 4.60345 4.93577 5.11726 5.19150 5.44263 5.62965 5.74050 5.76480 5.93088 5.98602 6.06723 6.13390 6.25205 6.38578 6.40223 6.53310 6.65835 6.77814 6.90828 7.04194 7.22719 7.80443 7.96793 8.25809 8.51635 8.61518 9.45720 10.11862 10.56294 11.52183 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049027 B = 0.011446 C = 0.011356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.971196 B = 2445.667684 C = 2464.999078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.585 5.585 3 C -0.244 4.244 4 H 0.070 0.930 5 C -0.007 4.007 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.291 1.291 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.192 3.808 12 H 0.071 0.929 13 C -0.142 4.142 14 C -0.120 4.120 15 C -0.150 4.150 16 C 0.100 3.900 17 C -0.165 4.165 18 O -0.524 6.524 19 H 0.000 1.000 20 H 0.015 0.985 21 H 0.053 0.947 22 H 0.246 0.754 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -10.698 -1.050 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.304 5.304 3 C -0.373 4.373 4 H 0.088 0.912 5 C -0.203 4.203 6 N -0.558 5.558 7 Si 0.732 3.268 8 H -0.219 1.219 9 H -0.218 1.218 10 H -0.208 1.208 11 C 0.082 3.918 12 H 0.089 0.911 13 C -0.182 4.182 14 C -0.158 4.158 15 C -0.188 4.188 16 C 0.056 3.944 17 C -0.223 4.223 18 O -0.326 6.326 19 H 0.019 0.981 20 H 0.033 0.967 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.143 -10.098 -0.524 10.589 hybrid contribution 0.519 0.458 -0.459 0.831 sum 3.662 -9.640 -0.984 10.359 Atomic orbital electron populations 1.20781 0.81270 0.93095 1.00611 1.43828 1.02580 0.99381 1.84652 1.19330 0.90984 0.83903 1.43096 0.91249 1.24782 0.96131 0.97480 1.01921 1.70244 1.08417 1.24276 1.52829 0.86271 0.78424 0.84300 0.77799 1.21902 1.21763 1.20818 1.21137 0.95437 0.86054 0.89200 0.91125 1.23039 1.01954 0.94031 0.99129 1.22203 1.00386 0.97917 0.95275 1.22910 1.01176 0.97788 0.96926 1.22727 0.84113 0.91776 0.95826 1.22401 0.98493 1.02860 0.98543 1.86977 1.39244 1.65610 1.40801 0.98129 0.96682 0.92890 0.94270 0.90990 0.92243 0.92526 0.92254 0.91775 0.92420 0.93875 0.91328 0.92697 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 5.01 6.68 59.85 0.40 5.41 16 2 N -0.58 -15.38 2.74 -171.59 -0.47 -15.85 16 3 C -0.24 -6.97 9.81 -15.06 -0.15 -7.12 16 4 H 0.07 1.92 7.72 -52.49 -0.41 1.51 16 5 C -0.01 -0.20 5.33 -17.43 -0.09 -0.29 16 6 N -0.91 -27.77 9.74 55.49 0.54 -27.23 16 7 Si 0.90 22.72 29.57 -169.99 -5.03 17.70 16 8 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 9 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 C 0.19 4.09 2.84 -66.27 -0.19 3.90 16 12 H 0.07 1.49 7.57 -51.93 -0.39 1.10 16 13 C -0.14 -2.62 6.33 -24.74 -0.16 -2.78 16 14 C -0.12 -1.76 6.83 -25.08 -0.17 -1.94 16 15 C -0.15 -2.23 6.26 -25.62 -0.16 -2.39 16 16 C 0.10 1.82 1.28 -89.50 -0.11 1.71 16 17 C -0.17 -2.77 8.49 37.16 0.32 -2.45 16 18 O -0.52 -10.56 9.70 -35.23 -0.34 -10.90 16 19 H 0.00 0.01 5.60 -51.93 -0.29 -0.28 16 20 H 0.01 0.43 7.39 -51.93 -0.38 0.05 16 21 H 0.05 1.58 6.61 -51.93 -0.34 1.23 16 22 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.07 1.44 6.10 -51.93 -0.32 1.12 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.92 7.96 -51.92 -0.41 0.51 16 28 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.35 5.41 9.07 45.56 0.41 5.83 16 LS Contribution 249.76 15.07 3.76 3.76 Total: -1.00 -31.66 249.76 -6.05 -37.71 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.20 Total: 0.76 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.32 Total: -5.95 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.07 Total: -43.08 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.34 Total: -10.90 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.66 -6.05 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306154931.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.692 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds