Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00178 * 2 1 4 4 H 1.08004 * 120.00234 * 187.58041 * 3 2 1 5 5 C 1.38812 * 120.00186 * 7.57961 * 3 2 1 6 6 N 1.31623 * 119.99596 * 16.29048 * 5 3 2 7 7 Si 1.86792 * 120.00340 * 196.28982 * 5 3 2 8 8 H 1.48507 * 109.47133 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47198 * 119.99624 * 7 5 3 10 10 H 1.48499 * 109.47293 * 239.99846 * 7 5 3 11 11 C 1.46507 * 119.99884 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.05613 * 4.22782 * 11 2 1 13 13 C 1.54267 * 110.03208 * 125.64511 * 11 2 1 14 14 C 1.54883 * 104.19644 * 142.89598 * 13 11 2 15 15 C 1.54893 * 102.74844 * 322.05710 * 14 13 11 16 16 C 1.53871 * 110.02959 * 242.81179 * 11 2 1 17 17 C 1.52992 * 110.03725 * 0.04864 * 16 11 2 18 18 O 1.42906 * 110.03189 * 121.43246 * 16 11 2 19 19 H 1.09005 * 109.47146 * 174.46927 * 1 2 3 20 20 H 1.08994 * 109.47042 * 294.47117 * 1 2 3 21 21 H 1.09001 * 109.46573 * 54.47407 * 1 2 3 22 22 H 0.97003 * 119.99630 * 180.02562 * 6 5 3 23 23 H 1.08994 * 110.48226 * 24.21460 * 13 11 2 24 24 H 1.09000 * 110.59396 * 261.62996 * 13 11 2 25 25 H 1.09006 * 110.75858 * 80.36717 * 14 13 11 26 26 H 1.08995 * 110.75773 * 203.74139 * 14 13 11 27 27 H 1.09002 * 110.48782 * 156.62413 * 15 14 13 28 28 H 1.09007 * 110.48558 * 279.26790 * 15 14 13 29 29 H 1.09000 * 109.47635 * 52.40030 * 17 16 11 30 30 H 1.09004 * 109.47673 * 172.40401 * 17 16 11 31 31 H 1.08999 * 109.47250 * 292.40403 * 17 16 11 32 32 H 0.96706 * 114.00040 * 179.97438 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2227 1.1900 -0.1234 5 6 1.4649 2.3828 0.1586 6 7 0.2333 2.3797 0.6229 7 14 2.2910 3.9978 -0.2869 8 1 3.6650 3.7306 -0.7831 9 1 1.5062 4.6793 -1.3475 10 1 2.3585 4.8674 0.9150 11 6 2.1976 -1.2688 0.0006 12 1 1.5001 -2.1031 -0.0745 13 6 3.1932 -1.3047 -1.1772 14 6 4.4314 -2.0390 -0.6057 15 6 4.5074 -1.5023 0.8453 16 6 3.0331 -1.3944 1.2865 17 6 2.8365 -0.1556 2.1625 18 8 2.6504 -2.5682 2.0063 19 1 -0.3634 -1.0229 -0.0990 20 1 -0.3633 0.4257 0.9353 21 1 -0.3632 0.5972 -0.8364 22 1 -0.2455 3.2161 0.7333 23 1 3.4577 -0.2928 -1.4840 24 1 2.7743 -1.8597 -2.0166 25 1 4.2771 -3.1180 -0.6108 26 1 5.3295 -1.7735 -1.1633 27 1 5.0464 -2.2027 1.4834 28 1 4.9842 -0.5222 0.8651 29 1 1.7710 0.0158 2.3157 30 1 3.3217 -0.3111 3.1261 31 1 3.2766 0.7114 1.6699 32 1 3.1422 -2.7036 2.8278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306154933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -22.163160 kcal Electronic energy + Delta-G solvation = -13999.408730 eV Core-core repulsion = 11767.953695 eV Total energy + Delta-G solvation = -2231.455035 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.89664 -35.16768 -33.69563 -30.83421 -29.32529 -27.07193 -25.86915 -24.20918 -21.74932 -20.35985 -18.65996 -16.64674 -15.70335 -15.20933 -14.79918 -14.05437 -13.16314 -13.08580 -12.95092 -12.51345 -12.11579 -11.50712 -11.14207 -10.94666 -10.75670 -10.62459 -10.55092 -10.49560 -10.15993 -10.09565 -9.91566 -9.57871 -9.43422 -9.08507 -8.42000 -6.79291 -5.61049 -3.03491 3.39065 3.46818 3.48130 4.50776 4.84891 5.21792 5.27559 5.49506 5.59624 5.75716 6.04057 6.14670 6.19906 6.22934 6.37564 6.46523 6.56963 6.64289 6.77845 6.83687 6.97876 7.08150 7.10415 7.52752 7.63347 7.77927 7.95421 8.33856 8.42678 9.28682 9.93899 10.37853 11.36749 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.013766 C = 0.012803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.793653 B = 2033.534342 C = 2186.462230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.596 5.596 3 C -0.233 4.233 4 H 0.076 0.924 5 C -0.007 4.007 6 N -0.909 5.909 7 Si 0.897 3.103 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.187 3.813 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.120 4.120 15 C -0.145 4.145 16 C 0.106 3.894 17 C -0.152 4.152 18 O -0.567 6.567 19 H -0.003 1.003 20 H 0.060 0.940 21 H 0.023 0.977 22 H 0.249 0.751 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.090 0.910 32 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -6.469 0.251 8.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.317 5.317 3 C -0.362 4.362 4 H 0.094 0.906 5 C -0.203 4.203 6 N -0.556 5.556 7 Si 0.728 3.272 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.077 3.923 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.158 4.158 15 C -0.183 4.183 16 C 0.063 3.937 17 C -0.210 4.210 18 O -0.372 6.372 19 H 0.016 0.984 20 H 0.078 0.922 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.523 -6.358 -0.240 8.425 hybrid contribution 0.833 1.047 0.306 1.373 sum 6.356 -5.311 0.066 8.283 Atomic orbital electron populations 1.21083 0.81894 0.93674 1.01870 1.44137 1.02061 1.00219 1.85332 1.19057 0.91830 0.83412 1.41915 0.90624 1.24754 0.96584 0.97520 1.01487 1.70149 1.11608 1.24841 1.48989 0.86277 0.78579 0.84476 0.77879 1.20508 1.21751 1.22005 1.20798 0.92481 0.89029 0.89971 0.91744 1.22808 0.95331 1.01020 0.98156 1.22384 0.98192 0.99365 0.95899 1.23009 0.97639 1.00693 0.96936 1.22789 0.92711 0.84266 0.93909 1.22477 1.03955 0.98608 0.95917 1.86547 1.65896 1.46115 1.38636 0.98431 0.92202 0.95851 0.94019 0.90132 0.92751 0.92218 0.92598 0.92636 0.91227 0.90944 0.96626 0.89147 0.79423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 9.05 59.85 0.54 4.57 16 2 N -0.60 -14.74 1.90 -172.20 -0.33 -15.07 16 3 C -0.23 -6.07 5.53 -15.06 -0.08 -6.15 16 4 H 0.08 1.93 6.35 -52.48 -0.33 1.60 16 5 C -0.01 -0.19 5.26 -17.43 -0.09 -0.28 16 6 N -0.91 -26.00 10.01 55.49 0.56 -25.44 16 7 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 8 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.19 4.00 3.24 -66.81 -0.22 3.79 16 12 H 0.06 1.41 7.41 -51.93 -0.38 1.03 16 13 C -0.13 -2.53 6.35 -25.08 -0.16 -2.69 16 14 C -0.12 -1.94 6.91 -24.74 -0.17 -2.11 16 15 C -0.14 -2.43 6.09 -25.07 -0.15 -2.58 16 16 C 0.11 2.06 1.30 -89.51 -0.12 1.95 16 17 C -0.15 -3.25 7.32 37.15 0.27 -2.98 16 18 O -0.57 -10.48 12.90 -35.23 -0.45 -10.94 16 19 H 0.00 -0.07 7.58 -51.93 -0.39 -0.46 16 20 H 0.06 1.65 6.57 -51.93 -0.34 1.31 16 21 H 0.02 0.62 7.69 -51.93 -0.40 0.22 16 22 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 23 H 0.08 1.66 6.44 -51.93 -0.33 1.33 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 28 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 29 H 0.07 1.80 7.37 -51.93 -0.38 1.42 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 2.08 5.11 -51.93 -0.27 1.81 16 32 H 0.36 5.12 9.07 45.56 0.41 5.53 16 LS Contribution 247.02 15.07 3.72 3.72 Total: -1.00 -28.59 247.02 -5.78 -34.37 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.07 Total: 3.26 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.18 Total: -6.48 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.23 Total: -40.51 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.45 Total: -10.94 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.59 -5.78 -34.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306154933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.206 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds