Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00178 * 2 1 4 4 H 1.08004 * 120.00234 * 187.58041 * 3 2 1 5 5 C 1.38812 * 120.00186 * 7.57961 * 3 2 1 6 6 N 1.31623 * 119.99596 * 16.29048 * 5 3 2 7 7 Si 1.86792 * 120.00340 * 196.28982 * 5 3 2 8 8 H 1.48507 * 109.47133 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47198 * 119.99624 * 7 5 3 10 10 H 1.48499 * 109.47293 * 239.99846 * 7 5 3 11 11 C 1.46507 * 119.99884 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.05613 * 4.22782 * 11 2 1 13 13 C 1.54267 * 110.03208 * 125.64511 * 11 2 1 14 14 C 1.54883 * 104.19644 * 142.89598 * 13 11 2 15 15 C 1.54893 * 102.74844 * 322.05710 * 14 13 11 16 16 C 1.53871 * 110.02959 * 242.81179 * 11 2 1 17 17 C 1.52992 * 110.03725 * 0.04864 * 16 11 2 18 18 O 1.42906 * 110.03189 * 121.43246 * 16 11 2 19 19 H 1.09005 * 109.47146 * 174.46927 * 1 2 3 20 20 H 1.08994 * 109.47042 * 294.47117 * 1 2 3 21 21 H 1.09001 * 109.46573 * 54.47407 * 1 2 3 22 22 H 0.97003 * 119.99630 * 180.02562 * 6 5 3 23 23 H 1.08994 * 110.48226 * 24.21460 * 13 11 2 24 24 H 1.09000 * 110.59396 * 261.62996 * 13 11 2 25 25 H 1.09006 * 110.75858 * 80.36717 * 14 13 11 26 26 H 1.08995 * 110.75773 * 203.74139 * 14 13 11 27 27 H 1.09002 * 110.48782 * 156.62413 * 15 14 13 28 28 H 1.09007 * 110.48558 * 279.26790 * 15 14 13 29 29 H 1.09000 * 109.47635 * 52.40030 * 17 16 11 30 30 H 1.09004 * 109.47673 * 172.40401 * 17 16 11 31 31 H 1.08999 * 109.47250 * 292.40403 * 17 16 11 32 32 H 0.96706 * 114.00040 * 179.97438 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2227 1.1900 -0.1234 5 6 1.4649 2.3828 0.1586 6 7 0.2333 2.3797 0.6229 7 14 2.2910 3.9978 -0.2869 8 1 3.6650 3.7306 -0.7831 9 1 1.5062 4.6793 -1.3475 10 1 2.3585 4.8674 0.9150 11 6 2.1976 -1.2688 0.0006 12 1 1.5001 -2.1031 -0.0745 13 6 3.1932 -1.3047 -1.1772 14 6 4.4314 -2.0390 -0.6057 15 6 4.5074 -1.5023 0.8453 16 6 3.0331 -1.3944 1.2865 17 6 2.8365 -0.1556 2.1625 18 8 2.6504 -2.5682 2.0063 19 1 -0.3634 -1.0229 -0.0990 20 1 -0.3633 0.4257 0.9353 21 1 -0.3632 0.5972 -0.8364 22 1 -0.2455 3.2161 0.7333 23 1 3.4577 -0.2928 -1.4840 24 1 2.7743 -1.8597 -2.0166 25 1 4.2771 -3.1180 -0.6108 26 1 5.3295 -1.7735 -1.1633 27 1 5.0464 -2.2027 1.4834 28 1 4.9842 -0.5222 0.8651 29 1 1.7710 0.0158 2.3157 30 1 3.3217 -0.3111 3.1261 31 1 3.2766 0.7114 1.6699 32 1 3.1422 -2.7036 2.8278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306154933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -41.348496 kcal Electronic energy + Delta-G solvation = -14000.240669 eV Core-core repulsion = 11767.953695 eV Total energy + Delta-G solvation = -2232.286974 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48578 -36.92394 -35.28346 -32.77218 -30.94392 -28.73663 -27.88646 -25.83988 -23.66018 -21.76681 -20.36273 -18.55998 -17.24000 -16.97525 -16.39206 -15.79089 -14.95370 -14.86726 -14.64613 -14.17021 -13.73914 -13.14950 -12.95812 -12.83121 -12.65335 -12.35509 -12.33830 -11.94863 -11.90134 -11.78672 -11.65529 -11.26958 -11.15369 -10.58990 -10.46463 -8.80389 -7.67340 -5.11094 1.46609 1.49656 1.57765 2.54334 3.30516 3.39386 3.68899 3.92294 4.10515 4.22145 4.51853 4.59784 4.67063 4.79479 4.85693 4.92560 5.05648 5.12254 5.23303 5.25761 5.35972 5.39455 5.46622 5.59035 5.68950 5.84390 5.85659 6.36793 7.05915 7.21666 7.94785 8.35586 9.30326 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.013766 C = 0.012803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.793653 B = 2033.534342 C = 2186.462230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.607 5.607 3 C -0.216 4.216 4 H 0.083 0.917 5 C -0.066 4.066 6 N -0.943 5.943 7 Si 0.955 3.045 8 H -0.264 1.264 9 H -0.299 1.299 10 H -0.298 1.298 11 C 0.172 3.828 12 H 0.056 0.944 13 C -0.131 4.131 14 C -0.110 4.110 15 C -0.138 4.138 16 C 0.109 3.891 17 C -0.142 4.142 18 O -0.576 6.576 19 H 0.018 0.982 20 H 0.032 0.968 21 H 0.000 1.000 22 H 0.241 0.759 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.435 -7.773 0.061 11.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.329 5.329 3 C -0.346 4.346 4 H 0.101 0.899 5 C -0.259 4.259 6 N -0.593 5.593 7 Si 0.785 3.215 8 H -0.188 1.188 9 H -0.226 1.226 10 H -0.226 1.226 11 C 0.065 3.935 12 H 0.074 0.926 13 C -0.170 4.170 14 C -0.148 4.148 15 C -0.176 4.176 16 C 0.067 3.933 17 C -0.199 4.199 18 O -0.384 6.384 19 H 0.037 0.963 20 H 0.050 0.950 21 H 0.018 0.982 22 H 0.051 0.949 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 7.908 -7.700 -0.427 11.046 hybrid contribution 0.101 1.336 0.414 1.403 sum 8.009 -6.364 -0.013 10.229 Atomic orbital electron populations 1.20768 0.82831 0.94084 0.99428 1.44310 1.01860 1.01356 1.85410 1.19281 0.92066 0.83812 1.39396 0.89917 1.25439 0.97351 1.00385 1.02678 1.70331 1.13053 1.24777 1.51141 0.85350 0.78289 0.80960 0.76909 1.18814 1.22637 1.22585 1.21105 0.93066 0.87056 0.92307 0.92562 1.22723 0.96140 1.00659 0.97453 1.22365 0.97450 0.99764 0.95197 1.22944 0.95277 1.01491 0.97896 1.22524 0.94380 0.83779 0.92606 1.22291 1.00922 0.99013 0.97703 1.86497 1.66804 1.45099 1.39953 0.96344 0.95018 0.98153 0.94898 0.92038 0.91726 0.90748 0.90276 0.89669 0.91574 0.95363 0.93908 0.91078 0.76961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 9.05 9.05 127.77 1.16 10.21 16 2 N -0.61 -30.23 1.90 -698.70 -1.33 -31.55 16 3 C -0.22 -11.26 5.53 84.03 0.46 -10.80 16 4 H 0.08 4.15 6.35 -2.91 -0.02 4.13 16 5 C -0.07 -3.63 5.26 84.86 0.45 -3.18 16 6 N -0.94 -55.86 10.01 21.65 0.22 -55.65 16 7 Si 0.95 44.93 29.58 68.60 2.03 46.96 16 8 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 9 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 10 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 11 C 0.17 7.17 3.24 45.71 0.15 7.32 16 12 H 0.06 2.40 7.41 -2.39 -0.02 2.39 16 13 C -0.13 -4.62 6.35 31.67 0.20 -4.42 16 14 C -0.11 -3.07 6.91 31.88 0.22 -2.85 16 15 C -0.14 -4.07 6.09 31.67 0.19 -3.88 16 16 C 0.11 4.02 1.30 -10.07 -0.01 4.01 16 17 C -0.14 -5.91 7.32 71.98 0.53 -5.38 16 18 O -0.58 -19.61 12.90 -148.98 -1.92 -21.53 16 19 H 0.02 0.84 7.58 -2.38 -0.02 0.82 16 20 H 0.03 1.82 6.57 -2.39 -0.02 1.81 16 21 H 0.00 -0.01 7.69 -2.39 -0.02 -0.02 16 22 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 23 H 0.06 2.41 6.44 -2.39 -0.02 2.40 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.04 8.06 -2.39 -0.02 2.03 16 28 H 0.07 2.02 7.72 -2.38 -0.02 2.00 16 29 H 0.03 1.40 7.37 -2.39 -0.02 1.38 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 3.22 5.11 -2.39 -0.01 3.20 16 32 H 0.38 9.42 9.07 -74.05 -0.67 8.75 16 Total: -1.00 -62.00 247.02 2.77 -59.23 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.43 Total: 11.52 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 3.34 Total: -8.97 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.11 Total: -87.20 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.92 Total: -21.53 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -62.00 2.77 -59.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306154933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.877 kcal (2) G-P(sol) polarization free energy of solvation -61.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds