Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.56353 * 2 1 4 4 C 1.54472 * 110.51176 * 237.32282 * 2 1 3 5 5 O 1.44431 * 104.80471 * 217.37219 * 4 2 1 6 6 C 1.44421 * 105.27147 * 40.51501 * 5 4 2 7 7 C 1.54484 * 104.80241 * 319.48672 * 6 5 4 8 8 H 1.09005 * 110.51125 * 265.19692 * 7 6 5 9 9 N 1.46898 * 110.51262 * 142.62828 * 7 6 5 10 10 C 1.46904 * 111.00202 * 86.45322 * 9 7 6 11 11 C 1.50697 * 109.46891 * 180.02562 * 10 9 7 12 12 H 1.07991 * 120.00449 * 359.72239 * 11 10 9 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 H 1.09000 * 109.47276 * 297.31697 * 1 2 3 20 20 H 1.08994 * 109.47365 * 57.32155 * 1 2 3 21 21 H 1.09005 * 109.46602 * 177.31938 * 1 2 3 22 22 H 1.09001 * 109.47131 * 182.67855 * 3 2 1 23 23 H 1.09000 * 109.46901 * 302.68270 * 3 2 1 24 24 H 1.09001 * 109.47117 * 62.67591 * 3 2 1 25 25 H 1.09007 * 110.37695 * 98.54187 * 4 2 1 26 26 H 1.08998 * 110.46904 * 336.25431 * 4 2 1 27 27 H 1.08999 * 110.36903 * 200.66197 * 6 5 4 28 28 H 1.08997 * 110.37940 * 78.32067 * 6 5 4 29 29 H 1.00899 * 111.00328 * 210.40975 * 9 7 6 30 30 H 1.08998 * 109.47046 * 59.99771 * 10 9 7 31 31 H 1.09001 * 109.47014 * 299.99971 * 10 9 7 32 32 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0713 -0.7811 -1.2178 5 8 3.2399 -1.4712 -0.7238 6 6 2.8758 -1.9422 0.5920 7 6 2.0714 -0.7813 1.2180 8 1 2.7215 -0.1484 1.8222 9 7 0.9632 -1.3019 2.0296 10 6 1.4058 -1.5942 3.3996 11 6 0.2448 -2.1256 4.2000 12 1 -0.7259 -2.2310 3.7386 13 6 0.4205 -2.4713 5.5231 14 7 1.6025 -2.3425 6.0851 15 14 -1.0205 -3.1227 6.5174 16 1 -1.5354 -4.3649 5.8874 17 1 -0.5729 -3.4182 7.9023 18 1 -2.0987 -2.1022 6.5534 19 1 -0.3634 0.4716 0.9130 20 1 -0.3634 0.5548 -0.8649 21 1 -0.3633 -1.0266 -0.0481 22 1 3.1561 1.4121 -0.0480 23 1 1.6754 1.9676 -0.8650 24 1 1.7533 1.9384 0.9130 25 1 2.3464 -0.0938 -2.0178 26 1 1.3294 -1.4968 -1.5720 27 1 3.7689 -2.1465 1.1824 28 1 2.2565 -2.8360 0.5173 29 1 0.1835 -0.6614 2.0305 30 1 1.7797 -0.6813 3.8631 31 1 2.2003 -2.3401 3.3733 32 1 1.7262 -2.5860 7.0159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306243260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = -51.230008 kcal Electronic energy + Delta-G solvation = -13246.624740 eV Core-core repulsion = 11013.909272 eV Total energy + Delta-G solvation = -2232.715469 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.69113 -35.27134 -33.64165 -32.06796 -28.38719 -27.35069 -25.87972 -25.55545 -22.39650 -20.84184 -18.78209 -16.53866 -15.83203 -15.31664 -15.01619 -14.73615 -14.51767 -13.56085 -12.96680 -12.80268 -12.56163 -12.31943 -11.86997 -11.54789 -11.26383 -11.20942 -10.85691 -10.70954 -10.49297 -10.48025 -10.21510 -9.85510 -9.38621 -9.17941 -8.50053 -7.36029 -6.05148 -4.07522 3.31964 3.36062 3.38918 4.29642 4.42077 4.72408 4.90947 5.09111 5.27333 5.30702 5.52917 5.59887 5.74464 5.76990 5.85657 5.90156 6.01210 6.13699 6.18207 6.29485 6.35903 6.45579 6.54795 7.03220 7.28496 7.39395 7.76014 8.10555 8.35240 8.57253 9.01311 9.57471 11.05898 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055280 B = 0.008166 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.390346 B = 3427.968075 C = 3592.902094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.059 3.941 5 O -0.384 6.384 6 C 0.055 3.945 7 C 0.062 3.938 8 H 0.049 0.951 9 N -0.682 5.682 10 C 0.192 3.808 11 C -0.516 4.516 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.060 0.940 20 H 0.050 0.950 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.335 0.665 30 H -0.014 1.014 31 H 0.028 0.972 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 5.076 -11.321 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C -0.193 4.193 4 C -0.018 4.018 5 O -0.302 6.302 6 C -0.022 4.022 7 C -0.050 4.050 8 H 0.067 0.933 9 N -0.317 5.317 10 C 0.065 3.935 11 C -0.554 4.554 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 H 0.079 0.921 20 H 0.069 0.931 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.156 0.844 30 H 0.004 0.996 31 H 0.046 0.954 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.069 4.372 -11.458 12.264 hybrid contribution -0.749 0.549 1.242 1.550 sum -0.818 4.921 -10.217 11.369 Atomic orbital electron populations 1.21741 0.93364 1.02962 1.01121 1.22050 0.96781 0.95790 0.95764 1.21833 1.01051 0.94779 1.01588 1.23427 0.88081 0.94623 0.95673 1.89046 1.35244 1.74036 1.31911 1.23514 0.99085 0.97133 0.82450 1.22861 0.94078 0.94214 0.93829 0.93298 1.60929 1.06998 1.48091 1.15653 1.19613 0.96603 0.95128 0.82113 1.21127 0.96209 1.43020 0.95081 0.92034 1.24994 0.95960 0.95821 0.97768 1.69954 1.22138 1.48487 1.13066 0.86540 0.82365 0.79449 0.78911 1.20138 1.21315 1.20293 0.92079 0.93131 0.90935 0.92367 0.92708 0.92519 0.89900 0.92299 0.89694 0.91034 0.84361 0.99610 0.95414 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 7.21 37.16 0.27 -1.54 16 2 C -0.10 -1.50 1.05 -152.95 -0.16 -1.66 16 3 C -0.14 -1.73 8.30 37.16 0.31 -1.42 16 4 C 0.06 0.83 6.73 37.93 0.26 1.09 16 5 O -0.38 -6.52 11.65 -35.23 -0.41 -6.93 16 6 C 0.06 0.99 7.28 37.94 0.28 1.27 16 7 C 0.06 1.12 3.06 -66.15 -0.20 0.92 16 8 H 0.05 0.95 7.47 -51.93 -0.39 0.56 16 9 N -0.68 -14.38 5.62 -106.33 -0.60 -14.98 16 10 C 0.19 5.01 5.29 -4.98 -0.03 4.98 16 11 C -0.52 -14.54 9.32 -34.44 -0.32 -14.86 16 12 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 15 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H 0.06 0.85 6.70 -51.93 -0.35 0.51 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.07 1.05 7.80 -51.93 -0.40 0.64 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.99 7.87 -51.92 -0.41 0.58 16 26 H 0.06 0.79 7.83 -51.93 -0.41 0.39 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 29 H 0.34 6.72 5.76 -39.29 -0.23 6.49 16 30 H -0.01 -0.39 8.08 -51.93 -0.42 -0.81 16 31 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -29.69 259.63 -6.18 -35.87 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.10 Total: 1.31 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 0.30 Total: -9.73 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.14 Total: -41.05 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.41 Total: -6.93 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.69 -6.18 -35.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306243260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.363 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds