Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.56353 * 2 1 4 4 C 1.54472 * 110.51176 * 237.32282 * 2 1 3 5 5 O 1.44431 * 104.80471 * 217.37219 * 4 2 1 6 6 C 1.44421 * 105.27147 * 40.51501 * 5 4 2 7 7 C 1.54484 * 104.80241 * 319.48672 * 6 5 4 8 8 H 1.09005 * 110.51125 * 265.19692 * 7 6 5 9 9 N 1.46898 * 110.51262 * 142.62828 * 7 6 5 10 10 C 1.46904 * 111.00202 * 86.45322 * 9 7 6 11 11 C 1.50697 * 109.46891 * 180.02562 * 10 9 7 12 12 H 1.07991 * 120.00449 * 359.72239 * 11 10 9 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 H 1.09000 * 109.47276 * 297.31697 * 1 2 3 20 20 H 1.08994 * 109.47365 * 57.32155 * 1 2 3 21 21 H 1.09005 * 109.46602 * 177.31938 * 1 2 3 22 22 H 1.09001 * 109.47131 * 182.67855 * 3 2 1 23 23 H 1.09000 * 109.46901 * 302.68270 * 3 2 1 24 24 H 1.09001 * 109.47117 * 62.67591 * 3 2 1 25 25 H 1.09007 * 110.37695 * 98.54187 * 4 2 1 26 26 H 1.08998 * 110.46904 * 336.25431 * 4 2 1 27 27 H 1.08999 * 110.36903 * 200.66197 * 6 5 4 28 28 H 1.08997 * 110.37940 * 78.32067 * 6 5 4 29 29 H 1.00899 * 111.00328 * 210.40975 * 9 7 6 30 30 H 1.08998 * 109.47046 * 59.99771 * 10 9 7 31 31 H 1.09001 * 109.47014 * 299.99971 * 10 9 7 32 32 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0713 -0.7811 -1.2178 5 8 3.2399 -1.4712 -0.7238 6 6 2.8758 -1.9422 0.5920 7 6 2.0714 -0.7813 1.2180 8 1 2.7215 -0.1484 1.8222 9 7 0.9632 -1.3019 2.0296 10 6 1.4058 -1.5942 3.3996 11 6 0.2448 -2.1256 4.2000 12 1 -0.7259 -2.2310 3.7386 13 6 0.4205 -2.4713 5.5231 14 7 1.6025 -2.3425 6.0851 15 14 -1.0205 -3.1227 6.5174 16 1 -1.5354 -4.3649 5.8874 17 1 -0.5729 -3.4182 7.9023 18 1 -2.0987 -2.1022 6.5534 19 1 -0.3634 0.4716 0.9130 20 1 -0.3634 0.5548 -0.8649 21 1 -0.3633 -1.0266 -0.0481 22 1 3.1561 1.4121 -0.0480 23 1 1.6754 1.9676 -0.8650 24 1 1.7533 1.9384 0.9130 25 1 2.3464 -0.0938 -2.0178 26 1 1.3294 -1.4968 -1.5720 27 1 3.7689 -2.1465 1.1824 28 1 2.2565 -2.8360 0.5173 29 1 0.1835 -0.6614 2.0305 30 1 1.7797 -0.6813 3.8631 31 1 2.2003 -2.3401 3.3733 32 1 1.7262 -2.5860 7.0159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306243260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = -71.996002 kcal Electronic energy + Delta-G solvation = -13247.525221 eV Core-core repulsion = 11013.909272 eV Total energy + Delta-G solvation = -2233.615950 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.02126 -36.88428 -35.28432 -33.94211 -30.08463 -28.54446 -27.47215 -26.91838 -24.25679 -22.45886 -20.13365 -18.54058 -17.26033 -16.81194 -16.66446 -16.32942 -16.00607 -15.06552 -14.48766 -14.23228 -14.04824 -13.96254 -13.24558 -13.16726 -12.72933 -12.68349 -12.49443 -12.44321 -12.05220 -11.77634 -11.67088 -11.50959 -11.19904 -10.72215 -10.64448 -9.18156 -8.23618 -6.35224 1.40786 1.44323 1.52357 2.38970 3.00583 3.09800 3.44592 3.52783 3.87962 3.95482 4.25464 4.34572 4.38325 4.70703 4.75071 4.76238 4.83449 4.86056 4.97385 5.05602 5.09138 5.11929 5.22833 5.30282 5.43775 5.59315 5.81026 6.01483 6.41719 6.69651 6.87122 7.35892 8.87884 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055280 B = 0.008166 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.390346 B = 3427.968075 C = 3592.902094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.132 4.132 4 C 0.056 3.944 5 O -0.392 6.392 6 C 0.060 3.940 7 C 0.054 3.946 8 H 0.032 0.968 9 N -0.674 5.674 10 C 0.208 3.792 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.974 3.026 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.265 1.265 19 H 0.052 0.948 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.343 0.657 30 H -0.042 1.042 31 H -0.001 1.001 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 5.574 -12.486 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 C -0.189 4.189 4 C -0.020 4.020 5 O -0.311 6.311 6 C -0.018 4.018 7 C -0.057 4.057 8 H 0.050 0.950 9 N -0.309 5.309 10 C 0.080 3.920 11 C -0.574 4.574 12 H 0.085 0.915 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.190 1.190 19 H 0.071 0.929 20 H 0.101 0.899 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.165 0.835 30 H -0.025 1.025 31 H 0.017 0.983 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.529 4.883 -12.654 13.649 hybrid contribution -0.253 0.421 1.539 1.616 sum -1.782 5.304 -11.114 12.443 Atomic orbital electron populations 1.21714 0.92272 1.02702 1.02215 1.22075 0.97637 0.96395 0.93744 1.21819 1.00833 0.93610 1.02649 1.23676 0.87388 0.95069 0.95918 1.89037 1.36680 1.74373 1.31025 1.23338 0.98535 0.96689 0.83234 1.22957 0.93177 0.94769 0.94801 0.95012 1.60803 1.08135 1.49019 1.12976 1.19247 0.95359 0.92911 0.84504 1.21501 0.96810 1.43289 0.95839 0.91536 1.25976 0.98930 0.95832 0.99017 1.70092 1.24467 1.49325 1.13540 0.85373 0.78716 0.79076 0.77053 1.19289 1.20868 1.18992 0.92873 0.89858 0.92108 0.92819 0.89639 0.93260 0.86847 0.91478 0.90456 0.91998 0.83511 1.02471 0.98252 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 7.21 71.98 0.52 -2.71 16 2 C -0.10 -2.67 1.05 -51.17 -0.05 -2.72 16 3 C -0.13 -3.06 8.30 71.98 0.60 -2.47 16 4 C 0.06 1.42 6.73 72.48 0.49 1.91 16 5 O -0.39 -12.87 11.65 -148.98 -1.74 -14.61 16 6 C 0.06 2.16 7.28 72.49 0.53 2.69 16 7 C 0.05 1.98 3.06 45.93 0.14 2.12 16 8 H 0.03 1.28 7.47 -2.38 -0.02 1.26 16 9 N -0.67 -28.87 5.62 -490.33 -2.76 -31.63 16 10 C 0.21 11.23 5.29 85.56 0.45 11.68 16 11 C -0.54 -30.59 9.32 25.60 0.24 -30.35 16 12 H 0.07 3.65 7.81 -2.92 -0.02 3.62 16 13 C 0.00 0.04 5.46 84.66 0.46 0.51 16 14 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 15 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H 0.05 1.39 6.70 -2.39 -0.02 1.38 16 20 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.06 1.64 7.80 -2.38 -0.02 1.62 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.11 2.24 7.87 -2.38 -0.02 2.22 16 26 H 0.07 1.62 7.83 -2.39 -0.02 1.60 16 27 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 29 H 0.34 13.73 5.76 -89.69 -0.52 13.22 16 30 H -0.04 -2.48 8.08 -2.39 -0.02 -2.50 16 31 H 0.00 -0.04 8.12 -2.39 -0.02 -0.06 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -63.97 259.63 1.76 -62.21 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.57 Total: 13.68 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.37 Total: -19.34 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -2.47 Total: -88.17 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.74 Total: -14.61 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -63.97 1.76 -62.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306243260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.782 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds