Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.49213 * 126.05670 * 179.97438 * 9 7 2 11 11 C 1.50353 * 104.86072 * 172.90193 * 10 9 7 12 12 H 1.08996 * 110.06019 * 278.93924 * 11 10 9 13 13 C 1.51004 * 125.53741 * 144.30293 * 11 10 9 14 14 C 1.57465 * 101.10360 * 203.44670 * 13 11 10 15 15 C 1.55945 * 105.70226 * 25.59743 * 14 13 11 16 16 H 1.08997 * 110.49494 * 125.82002 * 15 14 13 17 17 F 1.39903 * 110.61145 * 248.43480 * 15 14 13 18 18 C 1.50294 * 104.14970 * 7.15447 * 15 14 13 19 19 H 1.08997 * 109.98823 * 80.47740 * 18 15 14 20 20 C 1.49697 * 126.05976 * 359.69214 * 9 7 2 21 21 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 22 22 H 1.08999 * 110.36436 * 291.75629 * 10 9 7 23 23 H 1.09006 * 110.35836 * 53.95449 * 10 9 7 24 24 H 1.08998 * 111.00405 * 322.08427 * 13 11 10 25 25 H 1.08997 * 111.00270 * 85.92677 * 13 11 10 26 26 H 1.09005 * 110.55593 * 266.37832 * 14 13 11 27 27 H 1.08996 * 109.97208 * 144.51317 * 14 13 11 28 28 H 1.08998 * 110.84542 * 273.09063 * 20 9 7 29 29 H 1.08996 * 110.84530 * 36.69755 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9310 -3.7518 0.0005 11 6 0.7695 -4.6895 0.1801 12 1 0.4955 -4.7478 1.2335 13 6 0.6340 -6.0513 -0.4582 14 6 -0.9287 -6.2432 -0.4344 15 6 -1.5305 -4.8046 -0.4251 16 1 -2.2416 -4.6831 -1.2423 17 9 -2.1460 -4.5361 0.8022 18 6 -0.3413 -3.9075 -0.6247 19 1 -0.0765 -3.8694 -1.6814 20 6 -0.1631 -2.5461 0.0065 21 1 -0.4850 0.8401 -0.0004 22 1 2.4311 -3.9448 -0.9485 23 1 2.6346 -3.8544 0.8269 24 1 1.0243 -6.0463 -1.4759 25 1 1.1261 -6.8154 0.1435 26 1 -1.2343 -6.7844 0.4611 27 1 -1.2515 -6.7801 -1.3263 28 1 -0.5502 -2.5349 1.0253 29 1 -0.6375 -1.7734 -0.5983 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306268013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -34.302147 kcal Electronic energy + Delta-G solvation = -13254.044922 eV Core-core repulsion = 10898.603196 eV Total energy + Delta-G solvation = -2355.441726 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.53180 -40.41904 -36.12377 -33.50524 -30.80235 -29.82068 -26.66045 -26.07669 -22.54288 -21.00276 -20.71635 -18.84077 -17.62533 -16.81882 -16.55731 -16.03607 -15.51726 -15.12900 -14.44277 -14.42201 -13.80560 -13.45546 -13.19143 -13.01615 -12.71343 -12.27746 -12.07594 -11.99231 -11.73904 -11.56535 -11.51142 -11.39317 -10.84707 -10.68892 -8.94615 -7.79291 -5.24329 1.44852 1.47932 1.56594 2.47113 3.08731 3.31347 3.37605 3.70585 3.83345 4.08556 4.20026 4.34186 4.37994 4.55863 4.61364 4.76387 4.89762 4.94184 5.04113 5.09880 5.16352 5.42043 5.50703 5.53040 5.59050 5.74257 6.20708 7.02484 7.69382 8.38659 9.24099 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.061985 B = 0.010469 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.616433 B = 2673.982502 C = 3004.595430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.072 4.072 3 Si 0.985 3.015 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.635 5.635 10 C 0.143 3.857 11 C -0.114 4.114 12 H 0.053 0.947 13 C -0.090 4.090 14 C -0.132 4.132 15 C 0.097 3.903 16 H 0.105 0.895 17 F -0.231 7.231 18 C -0.157 4.157 19 H 0.087 0.913 20 C 0.179 3.821 21 H 0.247 0.753 22 H 0.038 0.962 23 H 0.028 0.972 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.111 0.889 28 H -0.017 1.017 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 -12.552 -2.885 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.264 4.264 3 Si 0.813 3.187 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.363 5.363 10 C 0.020 3.980 11 C -0.133 4.133 12 H 0.072 0.928 13 C -0.127 4.127 14 C -0.170 4.170 15 C 0.061 3.939 16 H 0.122 0.878 17 F -0.212 7.212 18 C -0.177 4.177 19 H 0.106 0.894 20 C 0.055 3.945 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.002 0.998 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.887 -12.331 -2.842 12.685 hybrid contribution 0.262 1.414 0.433 1.502 sum -0.625 -10.917 -2.409 11.197 Atomic orbital electron populations 1.70088 1.06399 1.25078 1.58654 1.25708 0.96679 1.01192 1.02826 0.84977 0.77447 0.78644 0.77631 1.20881 1.22076 1.19461 1.19535 0.91094 0.83816 1.42538 0.89899 1.46120 1.01976 1.00900 1.87296 1.20750 0.94520 0.84379 0.98372 1.22154 0.95853 0.96135 0.99134 0.92821 1.21981 0.95554 0.93641 1.01556 1.23752 0.94746 0.93398 1.05056 1.21857 0.93205 0.96583 0.82291 0.87757 1.92752 1.84936 1.95374 1.48106 1.22983 0.97068 0.96729 1.00943 0.89432 1.20788 0.84146 0.93734 0.95812 0.94357 0.94443 0.95339 0.89579 0.89312 0.89685 0.87079 0.99849 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.33 10.13 21.65 0.22 -59.11 15 2 C -0.07 -4.24 5.49 84.86 0.47 -3.77 15 3 Si 0.99 47.00 29.55 68.60 2.03 49.03 15 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 15 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 7 C -0.24 -14.12 10.33 84.03 0.87 -13.25 15 8 H 0.08 4.61 7.83 -2.91 -0.02 4.59 15 9 N -0.64 -34.71 3.49 -694.89 -2.43 -37.14 15 10 C 0.14 6.15 7.13 85.00 0.61 6.75 15 11 C -0.11 -4.05 2.75 -10.56 -0.03 -4.07 15 12 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 13 C -0.09 -2.14 6.78 31.52 0.21 -1.92 15 14 C -0.13 -2.89 6.83 33.19 0.23 -2.66 15 15 C 0.10 3.00 4.56 30.74 0.14 3.14 15 16 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 17 F -0.23 -8.71 16.71 44.97 0.75 -7.96 15 18 C -0.16 -6.13 2.72 -10.54 -0.03 -6.16 15 19 H 0.09 3.32 8.14 -2.39 -0.02 3.30 15 20 C 0.18 9.50 5.57 85.14 0.47 9.97 15 21 H 0.25 14.87 8.31 -92.70 -0.77 14.10 15 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.03 1.21 8.14 -2.38 -0.02 1.19 15 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.08 1.77 8.07 -2.38 -0.02 1.75 15 27 H 0.11 1.70 8.14 -2.39 -0.02 1.68 15 28 H -0.02 -0.97 7.91 -2.39 -0.02 -0.99 15 29 H 0.07 4.20 5.94 -2.39 -0.01 4.19 15 Total: -1.00 -69.38 236.55 4.63 -64.75 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.12 Total: 2.40 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 2.94 Total: -11.98 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -2.21 Total: -96.24 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 0.75 Total: -7.96 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -69.38 4.63 -64.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.453 kcal (2) G-P(sol) polarization free energy of solvation -69.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds