Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00160 * 2 1 4 4 H 1.48500 * 109.47147 * 269.99650 * 3 2 1 5 5 H 1.48493 * 109.47078 * 29.99778 * 3 2 1 6 6 H 1.48500 * 109.47108 * 149.99711 * 3 2 1 7 7 C 1.38817 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99774 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00628 * 0.02562 * 7 2 1 10 10 C 1.47211 * 126.70747 * 179.97438 * 9 7 2 11 11 C 1.53780 * 106.38258 * 148.71855 * 10 9 7 12 12 H 1.08993 * 112.38701 * 256.85222 * 11 10 9 13 13 C 1.54411 * 109.06141 * 132.43921 * 11 10 9 14 14 C 1.55059 * 103.89318 * 222.03925 * 13 11 10 15 15 C 1.55057 * 102.14033 * 40.05509 * 14 13 11 16 16 H 1.08995 * 110.53308 * 201.31368 * 15 14 13 17 17 F 1.39892 * 110.53561 * 78.68257 * 15 14 13 18 18 C 1.54324 * 103.93685 * 319.92403 * 15 14 13 19 19 H 1.09000 * 111.69490 * 262.79818 * 18 15 14 20 20 C 1.47219 * 126.70079 * 359.97438 * 9 7 2 21 21 H 0.96996 * 119.99850 * 0.02562 * 1 2 3 22 22 H 1.09009 * 110.07009 * 29.49498 * 10 9 7 23 23 H 1.08994 * 110.12546 * 267.97963 * 10 9 7 24 24 H 1.09001 * 110.57411 * 103.42982 * 13 11 10 25 25 H 1.08997 * 110.53894 * 340.62504 * 13 11 10 26 26 H 1.09002 * 110.90474 * 281.83315 * 14 13 11 27 27 H 1.09003 * 110.90440 * 158.27537 * 14 13 11 28 28 H 1.08999 * 110.07324 * 92.04743 * 20 9 7 29 29 H 1.09007 * 110.07140 * 330.51245 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9078 -3.7402 0.0005 11 6 0.9212 -4.6372 0.7666 12 1 1.2606 -4.8580 1.7785 13 6 0.6757 -5.9265 -0.0469 14 6 -0.8522 -6.1599 0.0773 15 6 -1.4132 -4.7196 -0.0466 16 1 -2.4122 -4.6600 0.3851 17 9 -1.4336 -4.3144 -1.3854 18 6 -0.4202 -3.8627 0.7665 19 1 -0.7811 -3.6791 1.7785 20 6 -0.1365 -2.5600 0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 2.8742 -3.7314 0.5046 23 1 2.0229 -4.0990 -1.0222 24 1 1.2265 -6.7624 0.3845 25 1 0.9565 -5.7799 -1.0898 26 1 -1.1021 -6.5926 1.0460 27 1 -1.2166 -6.7903 -0.7338 28 1 -0.5038 -2.6400 -1.0226 29 1 -0.6121 -1.7185 0.5045 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306268015.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -29.220717 kcal Electronic energy + Delta-G solvation = -13366.923567 eV Core-core repulsion = 11011.702188 eV Total energy + Delta-G solvation = -2355.221379 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.08977 -38.29833 -34.28775 -31.43014 -29.37867 -28.08307 -24.68761 -24.37806 -20.40561 -20.21661 -18.51614 -16.91698 -16.18711 -15.34733 -14.85250 -14.43176 -13.88219 -13.22268 -12.86673 -12.48076 -12.27590 -11.88721 -11.18222 -11.09694 -10.84453 -10.67901 -10.36595 -10.24311 -9.90820 -9.81873 -9.76170 -9.69387 -9.41558 -8.61573 -6.77497 -5.56362 -3.01286 3.43516 3.47813 3.50079 4.53056 4.73783 4.86074 5.15066 5.24172 5.52264 5.70593 5.74529 5.83978 5.88156 5.91689 6.04089 6.10510 6.20543 6.32980 6.57892 6.63105 6.75358 6.91306 7.07716 7.65785 7.69464 7.93633 8.49192 9.28271 9.89513 10.58792 11.44275 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.063081 B = 0.010896 C = 0.009897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.768255 B = 2569.227338 C = 2828.337886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.137 3.863 11 C -0.103 4.103 12 H 0.073 0.927 13 C -0.117 4.117 14 C -0.148 4.148 15 C 0.090 3.910 16 H 0.078 0.922 17 F -0.202 7.202 18 C -0.138 4.138 19 H 0.081 0.919 20 C 0.129 3.871 21 H 0.252 0.748 22 H 0.037 0.963 23 H 0.019 0.981 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -10.365 1.775 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.210 4.210 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.011 3.989 11 C -0.123 4.123 12 H 0.092 0.908 13 C -0.155 4.155 14 C -0.185 4.185 15 C 0.054 3.946 16 H 0.096 0.904 17 F -0.183 7.183 18 C -0.158 4.158 19 H 0.100 0.900 20 C 0.003 3.997 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.726 -10.081 1.736 10.374 hybrid contribution 0.432 0.760 -0.080 0.878 sum -1.294 -9.321 1.656 9.555 Atomic orbital electron populations 1.69640 1.04897 1.24543 1.57947 1.24791 0.95716 0.97705 1.02752 0.86042 0.78441 0.83303 0.77555 1.21657 1.21680 1.20747 1.19119 0.90451 0.82434 1.42621 0.90435 1.44535 1.01933 0.99675 1.86070 1.21462 0.94772 0.86578 0.96124 1.22658 0.96669 0.94333 0.98663 0.90822 1.22572 0.94848 0.97293 1.00776 1.23175 0.97064 0.96080 1.02219 1.22244 0.99846 0.94279 0.78247 0.90418 1.92736 1.97737 1.91515 1.36314 1.23389 0.93907 0.98962 0.99557 0.90047 1.22056 0.85482 0.93962 0.98168 0.93747 0.94478 0.96336 0.92000 0.91097 0.90263 0.91147 0.94926 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 10.08 55.49 0.56 -27.10 15 2 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 15 3 Si 0.92 22.56 29.55 -169.99 -5.02 17.54 15 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.22 -6.30 10.34 -15.06 -0.16 -6.46 15 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 15 9 N -0.60 -16.16 3.39 -171.14 -0.58 -16.74 15 10 C 0.14 3.04 6.78 -3.25 -0.02 3.02 15 11 C -0.10 -1.90 3.91 -88.48 -0.35 -2.24 15 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 13 C -0.12 -1.78 6.34 -24.90 -0.16 -1.94 15 14 C -0.15 -2.03 6.72 -24.56 -0.16 -2.19 15 15 C 0.09 1.54 4.49 -24.95 -0.11 1.43 15 16 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 17 F -0.20 -4.11 14.91 2.25 0.03 -4.08 15 18 C -0.14 -2.73 3.90 -88.53 -0.35 -3.08 15 19 H 0.08 1.53 8.14 -51.93 -0.42 1.10 15 20 C 0.13 3.29 5.68 -3.25 -0.02 3.27 15 21 H 0.25 7.29 8.31 -40.82 -0.34 6.95 15 22 H 0.04 0.79 8.14 -51.92 -0.42 0.36 15 23 H 0.02 0.42 7.13 -51.93 -0.37 0.05 15 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.07 1.16 7.19 -51.93 -0.37 0.79 15 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.03 0.90 5.96 -51.93 -0.31 0.59 15 29 H 0.12 3.39 5.45 -51.93 -0.28 3.11 15 LS Contribution 231.76 15.07 3.49 3.49 Total: -1.00 -31.07 231.76 -6.78 -37.85 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.84 Total: -2.24 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.42 Total: -8.72 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.02 Total: -43.84 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.03 Total: -4.08 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.07 -6.78 -37.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268015.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.631 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds