Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00160 * 2 1 4 4 H 1.48500 * 109.47147 * 269.99650 * 3 2 1 5 5 H 1.48493 * 109.47078 * 29.99778 * 3 2 1 6 6 H 1.48500 * 109.47108 * 149.99711 * 3 2 1 7 7 C 1.38817 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99774 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00628 * 0.02562 * 7 2 1 10 10 C 1.47211 * 126.70747 * 179.97438 * 9 7 2 11 11 C 1.53780 * 106.38258 * 148.71855 * 10 9 7 12 12 H 1.08993 * 112.38701 * 256.85222 * 11 10 9 13 13 C 1.54411 * 109.06141 * 132.43921 * 11 10 9 14 14 C 1.55059 * 103.89318 * 222.03925 * 13 11 10 15 15 C 1.55057 * 102.14033 * 40.05509 * 14 13 11 16 16 H 1.08995 * 110.53308 * 201.31368 * 15 14 13 17 17 F 1.39892 * 110.53561 * 78.68257 * 15 14 13 18 18 C 1.54324 * 103.93685 * 319.92403 * 15 14 13 19 19 H 1.09000 * 111.69490 * 262.79818 * 18 15 14 20 20 C 1.47219 * 126.70079 * 359.97438 * 9 7 2 21 21 H 0.96996 * 119.99850 * 0.02562 * 1 2 3 22 22 H 1.09009 * 110.07009 * 29.49498 * 10 9 7 23 23 H 1.08994 * 110.12546 * 267.97963 * 10 9 7 24 24 H 1.09001 * 110.57411 * 103.42982 * 13 11 10 25 25 H 1.08997 * 110.53894 * 340.62504 * 13 11 10 26 26 H 1.09002 * 110.90474 * 281.83315 * 14 13 11 27 27 H 1.09003 * 110.90440 * 158.27537 * 14 13 11 28 28 H 1.08999 * 110.07324 * 92.04743 * 20 9 7 29 29 H 1.09007 * 110.07140 * 330.51245 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9078 -3.7402 0.0005 11 6 0.9212 -4.6372 0.7666 12 1 1.2606 -4.8580 1.7785 13 6 0.6757 -5.9265 -0.0469 14 6 -0.8522 -6.1599 0.0773 15 6 -1.4132 -4.7196 -0.0466 16 1 -2.4122 -4.6600 0.3851 17 9 -1.4336 -4.3144 -1.3854 18 6 -0.4202 -3.8627 0.7665 19 1 -0.7811 -3.6791 1.7785 20 6 -0.1365 -2.5600 0.0005 21 1 -0.4850 0.8400 -0.0004 22 1 2.8742 -3.7314 0.5046 23 1 2.0229 -4.0990 -1.0222 24 1 1.2265 -6.7624 0.3845 25 1 0.9565 -5.7799 -1.0898 26 1 -1.1021 -6.5926 1.0460 27 1 -1.2166 -6.7903 -0.7338 28 1 -0.5038 -2.6400 -1.0226 29 1 -0.6121 -1.7185 0.5045 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306268015.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -48.486122 kcal Electronic energy + Delta-G solvation = -13367.758978 eV Core-core repulsion = 11011.702188 eV Total energy + Delta-G solvation = -2356.056790 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.56504 -39.90000 -36.07443 -33.39095 -30.97495 -29.82268 -26.36447 -26.23735 -22.16332 -21.65665 -20.10445 -18.87305 -17.70884 -16.91323 -16.65812 -16.09846 -15.64568 -14.85715 -14.35619 -14.08607 -13.99362 -13.52187 -13.15347 -12.87338 -12.64173 -12.19452 -11.99642 -11.81050 -11.59562 -11.50596 -11.31948 -11.29045 -11.18060 -10.77171 -8.90676 -7.74500 -5.23500 1.44871 1.47990 1.56653 2.48924 3.30244 3.45153 3.46994 3.85066 3.90385 4.03109 4.35486 4.43023 4.49784 4.55598 4.67289 4.76101 4.82573 4.97296 5.06586 5.17217 5.28708 5.41317 5.47181 5.55960 5.68491 5.84124 6.36736 7.09759 7.77623 8.46486 9.24063 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.063081 B = 0.010896 C = 0.009897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.768255 B = 2569.227338 C = 2828.337886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.072 4.072 3 Si 0.986 3.014 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.625 5.625 10 C 0.129 3.871 11 C -0.096 4.096 12 H 0.095 0.905 13 C -0.113 4.113 14 C -0.131 4.131 15 C 0.080 3.920 16 H 0.104 0.896 17 F -0.226 7.226 18 C -0.136 4.136 19 H 0.092 0.908 20 C 0.131 3.869 21 H 0.247 0.753 22 H 0.042 0.958 23 H 0.013 0.987 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.001 0.999 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -12.110 2.731 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.264 4.264 3 Si 0.814 3.186 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.349 5.349 10 C 0.004 3.996 11 C -0.115 4.115 12 H 0.113 0.887 13 C -0.150 4.150 14 C -0.169 4.169 15 C 0.044 3.956 16 H 0.122 0.878 17 F -0.207 7.207 18 C -0.156 4.156 19 H 0.111 0.889 20 C 0.005 3.995 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.031 0.969 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.019 0.981 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.391 -11.864 2.693 12.245 hybrid contribution 0.350 1.312 -0.404 1.417 sum -1.041 -10.552 2.289 10.847 Atomic orbital electron populations 1.69935 1.06351 1.24887 1.58778 1.25710 0.96686 1.01191 1.02815 0.84964 0.77612 0.78652 0.77415 1.21501 1.21698 1.19175 1.19535 0.91038 0.83799 1.42469 0.90018 1.44888 1.02805 1.00965 1.86221 1.21699 0.96146 0.85253 0.96548 1.22650 0.94309 0.94812 0.99750 0.88704 1.22546 0.96658 0.96511 0.99297 1.23166 0.95199 0.93709 1.04800 1.22598 1.00684 0.95835 0.76527 0.87838 1.92692 1.97837 1.92005 1.38215 1.23314 0.96012 0.96572 0.99694 0.88945 1.21794 0.84832 0.95985 0.96841 0.94316 0.93945 0.96916 0.88513 0.92935 0.86851 0.89466 0.98102 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 10.08 21.65 0.22 -58.77 15 2 C -0.07 -4.26 5.49 84.86 0.47 -3.79 15 3 Si 0.99 47.09 29.55 68.60 2.03 49.12 15 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 15 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 7 C -0.24 -14.14 10.34 84.04 0.87 -13.27 15 8 H 0.08 4.59 7.83 -2.91 -0.02 4.56 15 9 N -0.62 -34.46 3.39 -695.35 -2.36 -36.82 15 10 C 0.13 5.67 6.78 86.51 0.59 6.26 15 11 C -0.10 -3.29 3.91 -9.41 -0.04 -3.33 15 12 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 13 C -0.11 -3.01 6.34 31.78 0.20 -2.81 15 14 C -0.13 -3.03 6.72 32.00 0.21 -2.82 15 15 C 0.08 2.55 4.49 31.75 0.14 2.69 15 16 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 17 F -0.23 -9.20 14.91 44.97 0.67 -8.53 15 18 C -0.14 -5.23 3.90 -9.44 -0.04 -5.27 15 19 H 0.09 3.32 8.14 -2.39 -0.02 3.30 15 20 C 0.13 6.90 5.68 86.50 0.49 7.40 15 21 H 0.25 14.80 8.31 -92.71 -0.77 14.03 15 22 H 0.04 1.78 8.14 -2.38 -0.02 1.76 15 23 H 0.01 0.58 7.13 -2.39 -0.02 0.57 15 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.05 1.61 7.19 -2.39 -0.02 1.59 15 26 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.00 0.07 5.96 -2.39 -0.01 0.05 15 29 H 0.08 4.99 5.45 -2.38 -0.01 4.97 15 Total: -1.00 -69.72 231.76 4.59 -65.14 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.13 Total: 4.80 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 2.90 Total: -14.94 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -2.14 Total: -95.59 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 0.67 Total: -8.53 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -69.72 4.59 -65.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306268015.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.651 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds