Wall clock time and date at job start Mon Mar 30 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 110.88547 * 2 1 4 4 C 1.55151 * 111.00723 * 236.07216 * 2 1 3 5 5 C 1.54328 * 103.02379 * 277.23815 * 4 2 1 6 6 H 1.08998 * 109.78421 * 97.49793 * 5 4 2 7 7 C 1.52999 * 109.99163 * 218.66644 * 5 4 2 8 8 O 1.42903 * 109.47416 * 184.31625 * 7 5 4 9 9 N 1.47023 * 107.26445 * 338.13555 * 5 4 2 10 10 C 1.36939 * 125.64881 * 178.85021 * 9 5 4 11 11 H 1.07999 * 119.99957 * 341.89697 * 10 9 5 12 12 C 1.38814 * 119.99735 * 161.89458 * 10 9 5 13 13 N 1.31614 * 120.00402 * 332.95666 * 12 10 9 14 14 Si 1.86803 * 119.99512 * 152.95748 * 12 10 9 15 15 H 1.48507 * 109.46862 * 180.02562 * 14 12 10 16 16 H 1.48493 * 109.47374 * 299.99546 * 14 12 10 17 17 H 1.48497 * 109.47197 * 60.00316 * 14 12 10 18 18 C 1.47421 * 108.70467 * 358.59038 * 9 5 4 19 19 H 1.09000 * 109.47655 * 297.57195 * 1 2 3 20 20 H 1.09001 * 109.47060 * 57.58027 * 1 2 3 21 21 H 1.09002 * 109.47286 * 177.57247 * 1 2 3 22 22 H 1.08998 * 109.47305 * 182.42280 * 3 2 1 23 23 H 1.08997 * 109.46981 * 302.42368 * 3 2 1 24 24 H 1.09000 * 109.47020 * 62.42338 * 3 2 1 25 25 H 1.09007 * 110.71742 * 35.79246 * 4 2 1 26 26 H 1.08995 * 110.71949 * 158.88451 * 4 2 1 27 27 H 1.09005 * 109.47023 * 304.31995 * 7 5 4 28 28 H 1.09000 * 109.47277 * 64.31653 * 7 5 4 29 29 H 0.96700 * 113.99727 * 179.97438 * 8 7 5 30 30 H 0.97003 * 119.99759 * 354.07727 * 13 12 10 31 31 H 1.08998 * 110.37200 * 143.19182 * 18 9 5 32 32 H 1.09003 * 110.36561 * 265.51689 * 18 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4294 0.0000 4 6 2.0862 -0.8084 -1.2018 5 6 2.0340 -2.2652 -0.6950 6 1 1.1301 -2.7513 -1.0620 7 6 3.2701 -3.0298 -1.1728 8 8 3.1623 -4.4006 -0.7836 9 7 2.0139 -2.2156 0.7743 10 6 1.9460 -3.2994 1.6085 11 1 1.6123 -4.2535 1.2282 12 6 2.3060 -3.1715 2.9431 13 7 3.1756 -2.2523 3.3050 14 14 1.5561 -4.3042 4.2253 15 1 2.1006 -3.9650 5.5646 16 1 0.0809 -4.1343 4.2339 17 1 1.8902 -5.7134 3.8970 18 6 2.0852 -0.8062 1.2007 19 1 -0.3634 0.4756 0.9109 20 1 -0.3633 0.5510 -0.8675 21 1 -0.3634 -1.0268 -0.0435 22 1 3.1642 1.4029 -0.0434 23 1 1.6902 1.9653 -0.8674 24 1 1.7605 1.9385 0.9109 25 1 1.4524 -0.6800 -2.0793 26 1 3.1122 -0.5143 -1.4226 27 1 3.3403 -2.9648 -2.2586 28 1 4.1629 -2.5940 -0.7243 29 1 3.9130 -4.9466 -1.0545 30 1 3.6293 -1.7219 2.6313 31 1 1.4671 -0.6453 2.0840 32 1 3.1182 -0.5228 1.4028 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306316299.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:43 Heat of formation + Delta-G solvation = -62.983366 kcal Electronic energy + Delta-G solvation = -13773.627754 eV Core-core repulsion = 11540.402622 eV Total energy + Delta-G solvation = -2233.225132 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32598 -37.37967 -35.41845 -33.19326 -30.61734 -28.17992 -27.77379 -26.43454 -24.40344 -21.31574 -19.95815 -19.33275 -18.05707 -16.92713 -15.96942 -15.64400 -15.34844 -15.10741 -14.85026 -14.24910 -13.95124 -13.55107 -12.96298 -12.94011 -12.73686 -12.51441 -12.32145 -12.09014 -11.90442 -11.64993 -11.51361 -11.42535 -11.18638 -10.82709 -10.43267 -8.90799 -8.20700 -5.20474 1.55192 1.64044 1.82287 2.68283 3.22288 3.42453 3.60065 3.69791 3.99310 4.08139 4.29583 4.43158 4.46487 4.59502 4.62545 4.74538 4.81398 4.88063 4.92578 5.02996 5.14175 5.15098 5.22792 5.38003 5.45547 5.58724 5.86783 6.42474 6.96351 7.06826 7.83227 8.39528 9.11412 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.014963 C = 0.011638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.400974 B = 1870.868745 C = 2405.337158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.102 4.102 5 C 0.145 3.855 6 H 0.028 0.972 7 C 0.075 3.925 8 O -0.579 6.579 9 N -0.609 5.609 10 C -0.301 4.301 11 H 0.053 0.947 12 C -0.091 4.091 13 N -0.957 5.957 14 Si 1.111 2.889 15 H -0.292 1.292 16 H -0.284 1.284 17 H -0.280 1.280 18 C 0.161 3.839 19 H 0.046 0.954 20 H 0.082 0.918 21 H 0.034 0.966 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.018 0.982 29 H 0.379 0.621 30 H 0.251 0.749 31 H 0.010 0.990 32 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 4.612 -10.620 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.182 4.182 4 C -0.139 4.139 5 C 0.039 3.961 6 H 0.046 0.954 7 C -0.005 4.005 8 O -0.385 6.385 9 N -0.334 5.334 10 C -0.431 4.431 11 H 0.071 0.929 12 C -0.285 4.285 13 N -0.602 5.602 14 Si 0.937 3.063 15 H -0.218 1.218 16 H -0.211 1.211 17 H -0.206 1.206 18 C 0.035 3.965 19 H 0.066 0.934 20 H 0.101 0.899 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.226 0.774 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -2.831 4.399 -8.700 10.151 hybrid contribution 1.028 -0.213 -1.470 1.806 sum -1.803 4.186 -10.169 11.144 Atomic orbital electron populations 1.21592 0.93274 1.00929 1.01950 1.21820 0.96423 0.95547 0.94402 1.21646 1.00478 0.93472 1.02586 1.22606 1.01974 0.91608 0.97744 1.21332 0.94873 0.95342 0.84572 0.95435 1.22768 0.98253 0.82212 0.97236 1.86659 1.48021 1.20881 1.82937 1.44843 1.86015 1.01505 1.01033 1.19881 1.39794 0.90622 0.92789 0.92897 1.26944 0.98207 1.03735 0.99615 1.70893 1.25152 1.27352 1.36783 0.82883 0.75546 0.74024 0.73846 1.21817 1.21077 1.20575 1.21514 0.95396 0.84444 0.95109 0.93449 0.89872 0.94672 0.93013 0.89698 0.92965 0.88170 0.90520 0.91496 0.96393 0.77401 0.93863 0.97142 0.98483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 8.60 71.98 0.62 -3.24 16 2 C -0.08 -2.82 0.96 -50.79 -0.05 -2.87 16 3 C -0.12 -3.43 8.66 71.98 0.62 -2.81 16 4 C -0.10 -3.26 5.45 31.78 0.17 -3.09 16 5 C 0.15 6.15 3.09 45.34 0.14 6.29 16 6 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 7 C 0.07 2.91 6.48 71.98 0.47 3.37 16 8 O -0.58 -24.53 12.18 -148.98 -1.81 -26.35 16 9 N -0.61 -32.20 3.00 -668.24 -2.01 -34.20 16 10 C -0.30 -18.11 8.86 84.03 0.74 -17.36 16 11 H 0.05 3.30 7.55 -2.91 -0.02 3.28 16 12 C -0.09 -5.55 5.11 84.86 0.43 -5.12 16 13 N -0.96 -61.88 12.95 21.65 0.28 -61.60 16 14 Si 1.11 55.03 30.00 68.60 2.06 57.09 16 15 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 18 C 0.16 7.86 4.23 86.86 0.37 8.22 16 19 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.03 1.29 7.83 -2.39 -0.02 1.27 16 22 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.10 2.53 8.05 -2.38 -0.02 2.52 16 26 H 0.08 2.27 7.72 -2.39 -0.02 2.25 16 27 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.38 11.79 9.12 -74.06 -0.68 11.12 16 30 H 0.25 16.46 5.99 -92.71 -0.56 15.91 16 31 H 0.01 0.56 7.89 -2.39 -0.02 0.55 16 32 H 0.00 -0.13 6.67 -2.39 -0.02 -0.15 16 Total: -1.00 -74.29 256.82 2.66 -71.63 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.62 Total: 10.03 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 3.52 Total: -16.60 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -1.73 Total: -95.81 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.81 Total: -26.35 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 2.06 Total: 57.09 kcal Total: -74.29 2.66 -71.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306316299.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.646 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds