Wall clock time and date at job start Mon Mar 30 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47180 * 2 1 4 4 C 1.50700 * 109.47256 * 239.99779 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00465 * 4 2 1 6 6 C 1.37885 * 119.99777 * 60.00122 * 4 2 1 7 7 N 1.31513 * 120.00137 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99659 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47304 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47129 * 120.00324 * 8 6 4 11 11 H 1.48497 * 109.47076 * 239.99694 * 8 6 4 12 12 C 1.52998 * 109.47256 * 120.00011 * 2 1 3 13 13 C 1.53010 * 109.46777 * 305.00084 * 12 2 1 14 14 H 1.08997 * 110.42278 * 55.85786 * 13 12 2 15 15 C 1.54906 * 110.37296 * 178.17051 * 13 12 2 16 16 C 1.55141 * 101.65274 * 155.89606 * 15 13 12 17 17 C 1.54311 * 103.01761 * 324.34936 * 16 15 13 18 18 N 1.47440 * 107.23978 * 22.28190 * 17 16 15 19 19 H 1.09001 * 109.47735 * 300.00303 * 1 2 3 20 20 H 1.09003 * 109.47157 * 60.00327 * 1 2 3 21 21 H 1.09000 * 109.47520 * 180.02562 * 1 2 3 22 22 H 0.96697 * 113.99787 * 180.02562 * 3 2 1 23 23 H 0.96999 * 120.00161 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.47407 * 185.00198 * 12 2 1 25 25 H 1.09002 * 109.47432 * 64.99492 * 12 2 1 26 26 H 1.09007 * 110.98938 * 37.80233 * 15 13 12 27 27 H 1.09004 * 111.02376 * 274.00908 * 15 13 12 28 28 H 1.09003 * 110.70280 * 205.96238 * 16 15 13 29 29 H 1.09002 * 110.84720 * 82.80145 * 16 15 13 30 30 H 1.09007 * 109.88857 * 262.87562 * 17 16 15 31 31 H 1.09003 * 110.02215 * 141.76619 * 17 16 15 32 32 H 1.00901 * 111.00072 * 123.25293 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 3.1454 -2.2878 -3.6037 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1875 -4.8165 12 6 2.0400 -0.7212 1.2492 13 6 1.4298 -0.0762 2.4953 14 1 0.3418 -0.0791 2.4311 15 6 1.8968 -0.8202 3.7713 16 6 1.7348 0.2804 4.8527 17 6 2.1185 1.5697 4.0967 18 7 1.9321 1.3048 2.6583 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 2.9703 1.4236 -0.0004 23 1 0.7089 1.1614 -3.4845 24 1 3.1262 -0.6443 1.2952 25 1 1.7516 -1.7715 1.2057 26 1 2.9379 -1.1308 3.6832 27 1 1.2534 -1.6741 3.9836 28 1 2.4153 0.1050 5.6859 29 1 0.7038 0.3313 5.2030 30 1 3.1606 1.8200 4.2956 31 1 1.4739 2.3914 4.4090 32 1 1.2962 1.9717 2.2472 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306625419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:17 Heat of formation + Delta-G solvation = -56.122427 kcal Electronic energy + Delta-G solvation = -13547.068482 eV Core-core repulsion = 11314.140862 eV Total energy + Delta-G solvation = -2232.927620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.39552 -35.85397 -32.04566 -31.06145 -29.65384 -28.14284 -25.38723 -24.40227 -20.76021 -20.31635 -18.55456 -16.73334 -16.35907 -14.83424 -14.61989 -14.20650 -13.52174 -13.08784 -12.82269 -12.41325 -11.81082 -11.40850 -11.28031 -11.04568 -10.96243 -10.85912 -10.68910 -10.48857 -10.37774 -10.09968 -10.07881 -9.74012 -8.63694 -8.42048 -7.89417 -7.64161 -5.85909 -4.05417 3.31527 3.40105 3.43682 4.46585 4.74524 5.01660 5.09780 5.34295 5.37783 5.68761 5.78199 5.95822 5.99183 6.15795 6.21318 6.22856 6.47681 6.57390 6.70284 6.78783 7.02062 7.07778 7.31611 7.57747 7.73778 7.90795 8.08693 8.20946 8.43593 8.96229 9.58692 9.79679 11.12747 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069195 B = 0.009344 C = 0.008995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.553853 B = 2995.918057 C = 3111.964768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.252 3.748 3 O -0.553 6.553 4 C -0.558 4.558 5 H 0.052 0.948 6 C 0.079 3.921 7 N -0.858 5.858 8 Si 0.883 3.117 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.121 4.121 13 C 0.082 3.918 14 H 0.048 0.952 15 C -0.129 4.129 16 C -0.143 4.143 17 C 0.045 3.955 18 N -0.663 5.663 19 H 0.011 0.989 20 H 0.086 0.914 21 H 0.033 0.967 22 H 0.348 0.652 23 H 0.256 0.744 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -0.968 10.386 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.213 3.787 3 O -0.355 6.355 4 C -0.596 4.596 5 H 0.070 0.930 6 C -0.125 4.125 7 N -0.495 5.495 8 Si 0.711 3.289 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.159 4.159 13 C -0.027 4.027 14 H 0.066 0.934 15 C -0.167 4.167 16 C -0.182 4.182 17 C -0.085 4.085 18 N -0.295 5.295 19 H 0.030 0.970 20 H 0.104 0.896 21 H 0.052 0.948 22 H 0.191 0.809 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.507 -0.860 10.116 10.165 hybrid contribution -0.018 -0.621 -0.570 0.843 sum 0.489 -1.481 9.545 9.672 Atomic orbital electron populations 1.21662 0.96991 0.98770 1.00701 1.18540 0.90877 0.80280 0.89020 1.86399 1.23677 1.28562 1.96874 1.21726 1.33152 1.13229 0.91505 0.92973 1.24988 0.94380 0.94442 0.98725 1.70013 1.35141 1.21736 1.22599 0.86709 0.78709 0.79850 0.83626 1.19895 1.21108 1.21036 1.22277 0.99883 0.98499 0.95255 1.22470 0.97117 0.88399 0.94740 0.93410 1.22800 1.01695 0.97250 0.94939 1.22777 1.00840 0.96302 0.98275 1.22592 1.00594 0.95892 0.89391 1.61702 1.53198 1.03932 1.10665 0.96959 0.89576 0.94834 0.80866 0.93392 0.92771 0.92948 0.91103 0.91712 0.91643 0.92138 0.91684 0.94145 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 8.15 37.16 0.30 -2.73 16 2 C 0.25 6.23 0.67 -91.77 -0.06 6.17 16 3 O -0.55 -13.90 10.39 -35.23 -0.37 -14.27 16 4 C -0.56 -15.34 8.21 -34.44 -0.28 -15.62 16 5 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 6 C 0.08 2.21 5.24 -17.82 -0.09 2.12 16 7 N -0.86 -24.81 10.87 55.43 0.60 -24.21 16 8 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C -0.12 -2.54 4.22 -26.73 -0.11 -2.65 16 13 C 0.08 1.48 2.87 -66.18 -0.19 1.29 16 14 H 0.05 0.90 6.17 -51.93 -0.32 0.58 16 15 C -0.13 -1.92 6.50 -24.59 -0.16 -2.08 16 16 C -0.14 -1.87 6.94 -24.91 -0.17 -2.04 16 17 C 0.05 0.65 7.58 -2.84 -0.02 0.62 16 18 N -0.66 -11.68 5.83 -103.84 -0.60 -12.28 16 19 H 0.01 0.26 6.26 -51.93 -0.33 -0.06 16 20 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.35 8.33 9.04 45.56 0.41 8.74 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.35 6.48 8.24 -39.29 -0.32 6.15 16 LS Contribution 253.36 15.07 3.82 3.82 Total: -1.00 -28.69 253.36 -6.58 -35.27 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.21 Total: 10.27 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.79 Total: -14.93 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.00 Total: -36.49 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.37 Total: -14.27 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.69 -6.58 -35.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306625419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.856 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds