Wall clock time and date at job start Mon Mar 30 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47180 * 2 1 4 4 C 1.50700 * 109.47256 * 239.99779 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00465 * 4 2 1 6 6 C 1.37885 * 119.99777 * 60.00122 * 4 2 1 7 7 N 1.31513 * 120.00137 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99659 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47304 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47129 * 120.00324 * 8 6 4 11 11 H 1.48497 * 109.47076 * 239.99694 * 8 6 4 12 12 C 1.52998 * 109.47256 * 120.00011 * 2 1 3 13 13 C 1.53010 * 109.46777 * 305.00084 * 12 2 1 14 14 H 1.08997 * 110.42278 * 55.85786 * 13 12 2 15 15 C 1.54906 * 110.37296 * 178.17051 * 13 12 2 16 16 C 1.55141 * 101.65274 * 155.89606 * 15 13 12 17 17 C 1.54311 * 103.01761 * 324.34936 * 16 15 13 18 18 N 1.47440 * 107.23978 * 22.28190 * 17 16 15 19 19 H 1.09001 * 109.47735 * 300.00303 * 1 2 3 20 20 H 1.09003 * 109.47157 * 60.00327 * 1 2 3 21 21 H 1.09000 * 109.47520 * 180.02562 * 1 2 3 22 22 H 0.96697 * 113.99787 * 180.02562 * 3 2 1 23 23 H 0.96999 * 120.00161 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.47407 * 185.00198 * 12 2 1 25 25 H 1.09002 * 109.47432 * 64.99492 * 12 2 1 26 26 H 1.09007 * 110.98938 * 37.80233 * 15 13 12 27 27 H 1.09004 * 111.02376 * 274.00908 * 15 13 12 28 28 H 1.09003 * 110.70280 * 205.96238 * 16 15 13 29 29 H 1.09002 * 110.84720 * 82.80145 * 16 15 13 30 30 H 1.09007 * 109.88857 * 262.87562 * 17 16 15 31 31 H 1.09003 * 110.02215 * 141.76619 * 17 16 15 32 32 H 1.00901 * 111.00072 * 123.25293 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 3.1454 -2.2878 -3.6037 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1875 -4.8165 12 6 2.0400 -0.7212 1.2492 13 6 1.4298 -0.0762 2.4953 14 1 0.3418 -0.0791 2.4311 15 6 1.8968 -0.8202 3.7713 16 6 1.7348 0.2804 4.8527 17 6 2.1185 1.5697 4.0967 18 7 1.9321 1.3048 2.6583 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 2.9703 1.4236 -0.0004 23 1 0.7089 1.1614 -3.4845 24 1 3.1262 -0.6443 1.2952 25 1 1.7516 -1.7715 1.2057 26 1 2.9379 -1.1308 3.6832 27 1 1.2534 -1.6741 3.9836 28 1 2.4153 0.1050 5.6859 29 1 0.7038 0.3313 5.2030 30 1 3.1606 1.8200 4.2956 31 1 1.4739 2.3914 4.4090 32 1 1.2962 1.9717 2.2472 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306625419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:16 Heat of formation + Delta-G solvation = -76.809461 kcal Electronic energy + Delta-G solvation = -13547.965539 eV Core-core repulsion = 11314.140862 eV Total energy + Delta-G solvation = -2233.824677 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.81982 -37.62515 -34.15140 -32.78537 -30.87064 -29.80960 -27.40057 -26.07722 -22.10051 -21.72566 -20.25818 -18.76434 -17.66607 -16.64694 -16.31785 -15.90970 -15.06526 -14.93541 -14.25837 -13.88391 -13.30792 -13.15819 -12.98567 -12.78805 -12.64342 -12.51305 -12.21429 -12.20768 -12.06881 -11.83501 -11.50729 -11.46433 -10.61775 -10.51653 -9.78547 -9.05307 -7.96720 -6.23739 1.39535 1.42505 1.52628 2.44350 3.21946 3.45859 3.86838 3.93853 4.19392 4.30820 4.41807 4.61855 4.72481 4.83603 4.87416 4.99661 5.02451 5.07341 5.09583 5.21828 5.30846 5.42067 5.49456 5.65204 5.82923 6.16409 6.30607 6.37571 6.68369 6.85431 7.46693 7.80402 8.99791 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069195 B = 0.009344 C = 0.008995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.553853 B = 2995.918057 C = 3111.964768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.244 3.756 3 O -0.559 6.559 4 C -0.576 4.576 5 H 0.045 0.955 6 C 0.033 3.967 7 N -0.886 5.886 8 Si 0.945 3.055 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 C -0.110 4.110 13 C 0.083 3.917 14 H 0.039 0.961 15 C -0.125 4.125 16 C -0.134 4.134 17 C 0.042 3.958 18 N -0.678 5.678 19 H 0.029 0.971 20 H 0.054 0.946 21 H 0.036 0.964 22 H 0.350 0.650 23 H 0.256 0.744 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -1.510 11.571 11.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.205 3.795 3 O -0.362 6.362 4 C -0.614 4.614 5 H 0.064 0.936 6 C -0.169 4.169 7 N -0.524 5.524 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 C -0.148 4.148 13 C -0.027 4.027 14 H 0.057 0.943 15 C -0.163 4.163 16 C -0.172 4.172 17 C -0.088 4.088 18 N -0.309 5.309 19 H 0.048 0.952 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.193 0.807 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.823 -1.411 11.316 11.433 hybrid contribution -0.103 -0.432 -0.928 1.029 sum 0.720 -1.842 10.388 10.574 Atomic orbital electron populations 1.21537 0.97093 0.98726 0.99947 1.18631 0.90878 0.80153 0.89856 1.86380 1.23866 1.28985 1.96996 1.22096 1.33020 1.13232 0.93029 0.93624 1.25690 0.94603 0.95139 1.01512 1.70149 1.36117 1.22981 1.23111 0.85732 0.78186 0.78783 0.80143 1.19455 1.20692 1.20826 1.22076 0.99329 0.98201 0.95241 1.22349 0.96317 0.89151 0.94842 0.94254 1.22765 1.01714 0.98051 0.93792 1.22754 1.02133 0.94295 0.98055 1.22688 1.01210 0.97262 0.87595 1.61632 1.52867 1.03390 1.13047 0.95178 0.92726 0.94458 0.80668 0.93494 0.93568 0.93077 0.91345 0.90258 0.89394 0.91052 0.91330 0.92782 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.15 71.98 0.59 -5.10 16 2 C 0.24 12.09 0.67 -11.54 -0.01 12.08 16 3 O -0.56 -28.36 10.39 -148.98 -1.55 -29.91 16 4 C -0.58 -31.76 8.21 25.60 0.21 -31.55 16 5 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 6 C 0.03 1.82 5.24 84.66 0.44 2.27 16 7 N -0.89 -51.73 10.87 21.45 0.23 -51.50 16 8 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 C -0.11 -4.56 4.22 30.60 0.13 -4.43 16 13 C 0.08 2.87 2.87 45.39 0.13 3.00 16 14 H 0.04 1.43 6.17 -2.39 -0.01 1.41 16 15 C -0.13 -3.40 6.50 31.98 0.21 -3.20 16 16 C -0.13 -3.03 6.94 31.77 0.22 -2.81 16 17 C 0.04 1.09 7.58 86.64 0.66 1.75 16 18 N -0.68 -23.04 5.83 -482.45 -2.81 -25.85 16 19 H 0.03 1.32 6.26 -2.39 -0.01 1.31 16 20 H 0.05 3.04 6.07 -2.39 -0.01 3.02 16 21 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.35 16.94 9.04 -74.06 -0.67 16.27 16 23 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 1.90 8.06 -2.38 -0.02 1.88 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.34 12.39 8.24 -89.69 -0.74 11.65 16 Total: -1.00 -60.12 253.36 0.18 -59.94 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.30 Total: 29.33 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 2.58 Total: -27.99 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -2.58 Total: -77.35 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.55 Total: -29.91 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -60.12 0.18 -59.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306625419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal (2) G-P(sol) polarization free energy of solvation -60.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds