Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.46995 * 2 1 4 4 C 1.50697 * 109.46733 * 119.99870 * 2 1 3 5 5 H 1.08000 * 119.99701 * 119.72660 * 4 2 1 6 6 C 1.37881 * 120.00394 * 299.99622 * 4 2 1 7 7 N 1.31511 * 119.99561 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00295 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47231 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47133 * 119.99947 * 8 6 4 11 11 H 1.48498 * 109.47076 * 240.00497 * 8 6 4 12 12 C 1.52995 * 109.47047 * 239.99634 * 2 1 3 13 13 C 1.52998 * 109.47188 * 185.50773 * 12 2 1 14 14 H 1.08996 * 110.33463 * 55.49621 * 13 12 2 15 15 C 1.54900 * 110.37605 * 177.87115 * 13 12 2 16 16 C 1.55149 * 101.65540 * 155.89802 * 15 13 12 17 17 C 1.54315 * 103.01754 * 324.34969 * 16 15 13 18 18 N 1.47445 * 107.23531 * 22.27778 * 17 16 15 19 19 H 1.08994 * 109.46765 * 305.51064 * 1 2 3 20 20 H 1.09002 * 109.46624 * 65.50815 * 1 2 3 21 21 H 1.08998 * 109.47179 * 185.50464 * 1 2 3 22 22 H 0.96697 * 113.99465 * 179.97438 * 3 2 1 23 23 H 0.96998 * 120.00138 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.47674 * 305.50819 * 12 2 1 25 25 H 1.08999 * 109.47147 * 65.50992 * 12 2 1 26 26 H 1.09000 * 110.99343 * 273.98996 * 15 13 12 27 27 H 1.09001 * 110.99267 * 37.80938 * 15 13 12 28 28 H 1.08999 * 110.70691 * 205.96610 * 16 15 13 29 29 H 1.09001 * 110.70093 * 82.72832 * 16 15 13 30 30 H 1.09005 * 109.88535 * 262.87851 * 17 16 15 31 31 H 1.08999 * 110.02337 * 141.76442 * 17 16 15 32 32 H 1.00895 * 111.00073 * 238.72105 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1483 -2.2856 3.6039 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5865 4.8165 12 6 2.0400 -0.7213 -1.2492 13 6 3.5637 -0.8423 -1.1819 14 1 3.8639 -1.3385 -0.2590 15 6 4.0980 -1.6174 -2.4120 16 6 5.5581 -1.1000 -2.4985 17 6 5.4302 0.3757 -2.0656 18 7 4.1908 0.4933 -1.2756 19 1 -0.3633 0.5969 0.8365 20 1 -0.3632 0.4261 -0.9352 21 1 -0.3633 -1.0229 0.0986 22 1 2.9703 1.4236 0.0004 23 1 0.7082 1.1610 3.4843 24 1 1.5985 -1.7165 -1.2999 25 1 1.7595 -0.1537 -2.1364 26 1 4.0747 -2.6929 -2.2362 27 1 3.5380 -1.3579 -3.3104 28 1 5.9323 -1.1709 -3.5198 29 1 6.2027 -1.6486 -1.8117 30 1 5.3713 1.0165 -2.9454 31 1 6.2872 0.6613 -1.4557 32 1 3.5590 1.1610 -1.6915 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306625426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = -74.030214 kcal Electronic energy + Delta-G solvation = -13679.789979 eV Core-core repulsion = 11446.085819 eV Total energy + Delta-G solvation = -2233.704160 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.07628 -37.57770 -34.15659 -32.71531 -30.86136 -30.19919 -27.18887 -26.00542 -21.92798 -21.55924 -21.17372 -18.98510 -17.01360 -16.57881 -16.46672 -16.04072 -15.13207 -14.80884 -14.29565 -14.04911 -13.42889 -13.06613 -12.95707 -12.83006 -12.60396 -12.48649 -12.44134 -12.24252 -12.01232 -11.91588 -11.60286 -11.46383 -10.55638 -10.41194 -9.88700 -9.21448 -7.94074 -6.16820 1.40608 1.43475 1.53091 2.46766 3.25348 3.41170 3.88165 3.96227 4.06475 4.38673 4.44115 4.62599 4.63522 4.72279 4.85032 4.98376 5.00740 5.09942 5.15638 5.16995 5.24230 5.33787 5.54871 5.67983 5.86230 6.10365 6.22828 6.36680 6.57633 6.89747 7.52192 7.86365 9.05139 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.038029 B = 0.012277 C = 0.010895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.102218 B = 2280.174219 C = 2569.413034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.239 3.761 3 O -0.590 6.590 4 C -0.552 4.552 5 H 0.054 0.946 6 C 0.028 3.972 7 N -0.892 5.892 8 Si 0.944 3.056 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.283 1.283 12 C -0.131 4.131 13 C 0.088 3.912 14 H 0.068 0.932 15 C -0.146 4.146 16 C -0.133 4.133 17 C 0.045 3.955 18 N -0.695 5.695 19 H 0.054 0.946 20 H 0.026 0.974 21 H 0.043 0.957 22 H 0.364 0.636 23 H 0.254 0.746 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 -3.890 -9.431 12.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.200 3.800 3 O -0.399 6.399 4 C -0.590 4.590 5 H 0.072 0.928 6 C -0.173 4.173 7 N -0.530 5.530 8 Si 0.771 3.229 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.209 1.209 12 C -0.170 4.170 13 C -0.021 4.021 14 H 0.086 0.914 15 C -0.185 4.185 16 C -0.171 4.171 17 C -0.084 4.084 18 N -0.329 5.329 19 H 0.073 0.927 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.215 0.785 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.416 -3.649 -8.667 11.384 hybrid contribution 0.253 -0.534 0.309 0.667 sum 6.670 -4.184 -8.357 11.482 Atomic orbital electron populations 1.21560 0.97193 0.99646 0.99463 1.18720 0.90761 0.79851 0.90656 1.86374 1.26599 1.29902 1.97069 1.21935 1.32236 1.12659 0.92199 0.92824 1.25701 0.94800 0.95239 1.01596 1.70175 1.36631 1.23340 1.22896 0.85744 0.78055 0.78762 0.80343 1.19197 1.21303 1.20888 1.22350 0.95455 1.00652 0.98508 1.22422 0.92818 0.89232 0.97653 0.91424 1.23191 0.96536 1.00718 0.98092 1.22737 0.96300 0.95760 1.02318 1.22695 0.93024 0.96737 0.95965 1.61664 1.08014 1.08984 1.54195 0.92679 0.95449 0.93844 0.78471 0.93718 0.91756 0.92985 0.90556 0.91020 0.89164 0.91347 0.91820 0.91222 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.54 71.98 0.61 -5.45 16 2 C 0.24 11.94 0.74 -11.54 -0.01 11.93 16 3 O -0.59 -31.17 11.75 -148.98 -1.75 -32.92 16 4 C -0.55 -30.03 7.42 25.60 0.19 -29.84 16 5 H 0.05 2.87 6.37 -2.91 -0.02 2.86 16 6 C 0.03 1.57 5.24 84.66 0.44 2.01 16 7 N -0.89 -53.06 10.93 21.45 0.23 -52.82 16 8 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C -0.13 -5.24 3.99 30.59 0.12 -5.12 16 13 C 0.09 3.16 3.08 45.38 0.14 3.30 16 14 H 0.07 2.86 6.21 -2.39 -0.01 2.85 16 15 C -0.15 -3.97 6.49 31.98 0.21 -3.76 16 16 C -0.13 -3.09 6.94 31.78 0.22 -2.87 16 17 C 0.04 1.17 7.58 86.64 0.66 1.83 16 18 N -0.70 -23.84 5.22 -482.46 -2.52 -26.35 16 19 H 0.05 3.11 6.24 -2.39 -0.01 3.10 16 20 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.36 18.08 5.81 -74.06 -0.43 17.65 16 23 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 1.94 8.05 -2.39 -0.02 1.92 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.34 11.76 6.96 -89.70 -0.62 11.14 16 Total: -1.00 -61.84 249.93 0.63 -61.21 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.05 Total: 32.38 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 2.59 Total: -27.99 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.28 Total: -79.17 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.75 Total: -32.92 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.84 0.63 -61.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306625426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.825 kcal (2) G-P(sol) polarization free energy of solvation -61.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds