Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.08989 * 109.87587 * 53.22782 * 3 2 1 5 5 C 1.54332 * 109.88092 * 174.24464 * 3 2 1 6 6 H 1.08998 * 110.71685 * 215.91887 * 5 3 2 7 7 C 1.53002 * 110.71753 * 339.01313 * 5 3 2 8 8 O 1.42902 * 109.46641 * 182.56090 * 7 5 3 9 9 C 1.55153 * 103.10112 * 97.46581 * 5 3 2 10 10 C 1.55122 * 101.49061 * 35.28214 * 9 5 3 11 11 N 1.47026 * 110.00981 * 292.12436 * 3 2 1 12 12 C 1.36932 * 125.64374 * 59.41771 * 11 3 2 13 13 H 1.08000 * 120.00266 * 2.76606 * 12 11 3 14 14 C 1.38819 * 119.99487 * 182.75967 * 12 11 3 15 15 N 1.31610 * 120.00443 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99816 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46964 * 90.00160 * 16 14 12 18 18 H 1.48494 * 109.47492 * 210.00308 * 16 14 12 19 19 H 1.48500 * 109.47145 * 330.00629 * 16 14 12 20 20 H 1.09001 * 109.47204 * 310.83534 * 1 2 3 21 21 H 1.08996 * 109.47225 * 70.83658 * 1 2 3 22 22 H 1.09004 * 109.47024 * 190.84365 * 1 2 3 23 23 H 1.09009 * 109.47159 * 239.99822 * 2 1 3 24 24 H 1.09003 * 109.47581 * 120.00615 * 2 1 3 25 25 H 1.08995 * 109.47050 * 62.56493 * 7 5 3 26 26 H 1.09000 * 109.47043 * 302.55937 * 7 5 3 27 27 H 0.96704 * 113.99542 * 179.97438 * 8 7 5 28 28 H 1.09003 * 111.00098 * 153.49267 * 9 5 3 29 29 H 1.09002 * 111.00619 * 277.33590 * 9 5 3 30 30 H 1.08994 * 110.41898 * 204.29429 * 10 9 5 31 31 H 1.09001 * 110.30053 * 82.08252 * 10 9 5 32 32 H 0.97000 * 120.00263 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5850 1.9964 0.8210 5 6 3.5763 1.4560 0.1455 6 1 3.8991 2.3045 0.7488 7 6 4.0741 0.1425 0.7521 8 8 5.4906 0.2067 0.9300 9 6 4.0670 1.6052 -1.3188 10 6 2.9721 2.5254 -1.9193 11 7 1.7171 2.0902 -1.2798 12 6 0.4591 2.2604 -1.7930 13 1 -0.4033 1.9441 -1.2249 14 6 0.2922 2.8395 -3.0435 15 7 1.3430 3.2246 -3.7360 16 14 -1.4241 3.0723 -3.7435 17 1 -1.9500 4.3992 -3.3335 18 1 -1.3685 2.9983 -5.2256 19 1 -2.3180 2.0046 -3.2277 20 1 -0.3634 0.6720 0.7775 21 1 -0.3633 0.3373 -0.9707 22 1 -0.3633 -1.0094 0.1933 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8290 -0.6825 0.0833 26 1 3.5936 -0.0171 1.7174 27 1 5.8756 -0.5939 1.3119 28 1 5.0462 2.0826 -1.3559 29 1 4.0853 0.6400 -1.8250 30 1 2.9136 2.3919 -2.9995 31 1 3.1796 3.5678 -1.6772 32 1 1.2264 3.6290 -4.6100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307077532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = -29.012360 kcal Electronic energy + Delta-G solvation = -13627.306641 eV Core-core repulsion = 11395.554602 eV Total energy + Delta-G solvation = -2231.752039 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.53296 -36.05252 -32.82548 -32.10622 -29.74238 -27.40281 -25.36737 -23.29319 -22.05669 -20.07528 -18.33004 -17.09871 -16.88894 -15.11625 -14.86414 -14.01752 -13.90602 -13.36183 -12.84485 -12.65655 -11.91514 -11.52211 -11.38363 -11.30471 -11.01425 -10.87736 -10.74818 -10.43090 -10.06069 -10.02054 -9.64441 -9.59039 -9.31423 -9.03808 -8.60103 -6.78382 -5.57271 -3.00605 3.41786 3.46516 3.48563 4.44045 4.60547 5.29999 5.38114 5.47315 5.58503 5.78810 5.84932 5.90267 6.06457 6.09991 6.17485 6.37961 6.51249 6.57581 6.61118 6.77638 6.84656 6.93155 7.12346 7.18304 7.61159 7.74497 7.85920 7.94813 8.45765 9.28380 9.90130 10.56151 11.44144 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048665 B = 0.011504 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.220514 B = 2433.403182 C = 2892.698365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C 0.169 3.831 4 H 0.032 0.968 5 C -0.098 4.098 6 H 0.073 0.927 7 C 0.088 3.912 8 O -0.576 6.576 9 C -0.130 4.130 10 C 0.143 3.857 11 N -0.595 5.595 12 C -0.219 4.219 13 H 0.088 0.912 14 C -0.015 4.015 15 N -0.921 5.921 16 Si 0.910 3.090 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.281 1.281 20 H 0.042 0.958 21 H 0.084 0.916 22 H 0.031 0.969 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.370 0.630 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.008 0.992 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -6.495 7.192 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.061 3.939 4 H 0.049 0.951 5 C -0.117 4.117 6 H 0.091 0.909 7 C 0.010 3.990 8 O -0.380 6.380 9 C -0.169 4.169 10 C 0.019 3.981 11 N -0.319 5.319 12 C -0.347 4.347 13 H 0.106 0.894 14 C -0.210 4.210 15 N -0.570 5.570 16 Si 0.741 3.259 17 H -0.218 1.218 18 H -0.218 1.218 19 H -0.207 1.207 20 H 0.061 0.939 21 H 0.103 0.897 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.216 0.784 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.026 0.974 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.239 -5.793 6.726 9.449 hybrid contribution -0.828 -0.388 -0.033 0.915 sum 2.411 -6.181 6.693 9.424 Atomic orbital electron populations 1.22024 0.96369 0.99086 1.03786 1.22086 0.96437 0.98733 0.99783 1.20865 0.90702 0.92021 0.90303 0.95073 1.22142 0.95989 0.95830 0.97745 0.90884 1.22380 0.79963 0.98355 0.98287 1.86510 1.22266 1.42745 1.86480 1.22982 0.99106 1.00769 0.94052 1.22117 0.82105 0.92787 1.01122 1.44530 1.02994 1.66701 1.17679 1.19297 0.83256 1.33093 0.99065 0.89443 1.24812 0.97260 1.01545 0.97385 1.69756 1.26640 1.47271 1.13375 0.86139 0.83601 0.77891 0.78313 1.21754 1.21750 1.20712 0.93883 0.89694 0.94976 0.92277 0.93785 0.93319 0.94188 0.78422 0.92453 0.92531 0.87084 0.97382 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.80 37.16 0.33 -2.56 16 2 C -0.13 -2.43 4.38 -26.73 -0.12 -2.55 16 3 C 0.17 3.55 3.18 -66.95 -0.21 3.34 16 4 H 0.03 0.68 8.09 -51.94 -0.42 0.26 16 5 C -0.10 -1.86 3.14 -88.78 -0.28 -2.14 16 6 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 7 C 0.09 1.35 5.10 37.16 0.19 1.54 16 8 O -0.58 -8.42 13.55 -35.23 -0.48 -8.90 16 9 C -0.13 -2.70 6.45 -24.47 -0.16 -2.86 16 10 C 0.14 3.61 6.00 -2.41 -0.01 3.60 16 11 N -0.59 -15.18 3.15 -162.44 -0.51 -15.69 16 12 C -0.22 -5.97 8.67 -15.06 -0.13 -6.10 16 13 H 0.09 2.27 5.39 -52.49 -0.28 1.99 16 14 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 15 N -0.92 -27.07 10.05 55.49 0.56 -26.51 16 16 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 21 H 0.08 1.81 5.24 -51.93 -0.27 1.54 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 1.17 7.88 -51.92 -0.41 0.76 16 24 H 0.04 0.69 6.20 -51.93 -0.32 0.37 16 25 H 0.05 0.74 6.87 -51.93 -0.36 0.38 16 26 H 0.04 0.55 7.41 -51.93 -0.38 0.17 16 27 H 0.37 3.43 9.12 45.56 0.42 3.85 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.16 7.98 -51.93 -0.41 0.75 16 30 H 0.11 3.12 5.70 -51.93 -0.30 2.82 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 247.65 15.07 3.73 3.73 Total: -1.00 -30.37 247.65 -6.20 -36.57 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.99 Total: 1.97 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.49 Total: -8.25 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.05 Total: -42.20 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.48 Total: -8.90 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.37 -6.20 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307077532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.557 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds