Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.08989 * 109.87587 * 53.22782 * 3 2 1 5 5 C 1.54332 * 109.88092 * 174.24464 * 3 2 1 6 6 H 1.08998 * 110.71685 * 215.91887 * 5 3 2 7 7 C 1.53002 * 110.71753 * 339.01313 * 5 3 2 8 8 O 1.42902 * 109.46641 * 182.56090 * 7 5 3 9 9 C 1.55153 * 103.10112 * 97.46581 * 5 3 2 10 10 C 1.55122 * 101.49061 * 35.28214 * 9 5 3 11 11 N 1.47026 * 110.00981 * 292.12436 * 3 2 1 12 12 C 1.36932 * 125.64374 * 59.41771 * 11 3 2 13 13 H 1.08000 * 120.00266 * 2.76606 * 12 11 3 14 14 C 1.38819 * 119.99487 * 182.75967 * 12 11 3 15 15 N 1.31610 * 120.00443 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99816 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46964 * 90.00160 * 16 14 12 18 18 H 1.48494 * 109.47492 * 210.00308 * 16 14 12 19 19 H 1.48500 * 109.47145 * 330.00629 * 16 14 12 20 20 H 1.09001 * 109.47204 * 310.83534 * 1 2 3 21 21 H 1.08996 * 109.47225 * 70.83658 * 1 2 3 22 22 H 1.09004 * 109.47024 * 190.84365 * 1 2 3 23 23 H 1.09009 * 109.47159 * 239.99822 * 2 1 3 24 24 H 1.09003 * 109.47581 * 120.00615 * 2 1 3 25 25 H 1.08995 * 109.47050 * 62.56493 * 7 5 3 26 26 H 1.09000 * 109.47043 * 302.55937 * 7 5 3 27 27 H 0.96704 * 113.99542 * 179.97438 * 8 7 5 28 28 H 1.09003 * 111.00098 * 153.49267 * 9 5 3 29 29 H 1.09002 * 111.00619 * 277.33590 * 9 5 3 30 30 H 1.08994 * 110.41898 * 204.29429 * 10 9 5 31 31 H 1.09001 * 110.30053 * 82.08252 * 10 9 5 32 32 H 0.97000 * 120.00263 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5850 1.9964 0.8210 5 6 3.5763 1.4560 0.1455 6 1 3.8991 2.3045 0.7488 7 6 4.0741 0.1425 0.7521 8 8 5.4906 0.2067 0.9300 9 6 4.0670 1.6052 -1.3188 10 6 2.9721 2.5254 -1.9193 11 7 1.7171 2.0902 -1.2798 12 6 0.4591 2.2604 -1.7930 13 1 -0.4033 1.9441 -1.2249 14 6 0.2922 2.8395 -3.0435 15 7 1.3430 3.2246 -3.7360 16 14 -1.4241 3.0723 -3.7435 17 1 -1.9500 4.3992 -3.3335 18 1 -1.3685 2.9983 -5.2256 19 1 -2.3180 2.0046 -3.2277 20 1 -0.3634 0.6720 0.7775 21 1 -0.3633 0.3373 -0.9707 22 1 -0.3633 -1.0094 0.1933 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8290 -0.6825 0.0833 26 1 3.5936 -0.0171 1.7174 27 1 5.8756 -0.5939 1.3119 28 1 5.0462 2.0826 -1.3559 29 1 4.0853 0.6400 -1.8250 30 1 2.9136 2.3919 -2.9995 31 1 3.1796 3.5678 -1.6772 32 1 1.2264 3.6290 -4.6100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307077532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = -50.717738 kcal Electronic energy + Delta-G solvation = -13628.247857 eV Core-core repulsion = 11395.554602 eV Total energy + Delta-G solvation = -2232.693255 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15266 -37.32901 -34.72300 -33.72367 -31.59935 -29.07889 -27.16727 -24.90935 -23.66752 -21.93377 -19.91443 -18.89098 -18.22896 -16.93198 -16.51942 -15.71066 -15.35709 -15.07587 -14.32995 -14.19667 -13.61204 -13.33492 -13.09040 -12.91609 -12.89240 -12.70317 -12.43750 -12.06019 -11.92144 -11.56617 -11.28026 -11.16083 -10.87226 -10.69748 -10.65007 -8.83282 -7.68267 -5.13517 1.47093 1.48544 1.56769 2.52265 3.35975 3.39046 3.68056 3.90875 4.09582 4.28610 4.39107 4.50222 4.53956 4.64282 4.68601 4.80545 4.94966 4.98168 5.14818 5.16250 5.23877 5.36112 5.47838 5.61054 5.64430 5.76178 5.89778 6.38439 7.02854 7.17164 7.86275 8.51313 9.32207 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048665 B = 0.011504 C = 0.009677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.220514 B = 2433.403182 C = 2892.698365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.160 3.840 4 H 0.028 0.972 5 C -0.093 4.093 6 H 0.068 0.932 7 C 0.098 3.902 8 O -0.591 6.591 9 C -0.116 4.116 10 C 0.144 3.856 11 N -0.614 5.614 12 C -0.219 4.219 13 H 0.099 0.901 14 C -0.078 4.078 15 N -0.954 5.954 16 Si 0.972 3.028 17 H -0.291 1.291 18 H -0.298 1.298 19 H -0.265 1.265 20 H 0.045 0.955 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.396 0.604 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.079 0.921 31 H -0.022 1.022 32 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -8.284 9.016 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C 0.053 3.947 4 H 0.046 0.954 5 C -0.112 4.112 6 H 0.086 0.914 7 C 0.020 3.980 8 O -0.400 6.400 9 C -0.155 4.155 10 C 0.019 3.981 11 N -0.338 5.338 12 C -0.348 4.348 13 H 0.116 0.884 14 C -0.270 4.270 15 N -0.605 5.605 16 Si 0.801 3.199 17 H -0.219 1.219 18 H -0.225 1.225 19 H -0.190 1.190 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.246 0.754 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.097 0.903 31 H -0.004 1.004 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.105 -7.624 8.599 11.904 hybrid contribution -0.738 0.171 -0.527 0.923 sum 2.367 -7.453 8.072 11.239 Atomic orbital electron populations 1.21950 0.96389 1.00821 1.01901 1.21981 0.96369 0.96749 1.01036 1.21099 0.92429 0.93205 0.87936 0.95417 1.22093 0.94447 0.98259 0.96444 0.91387 1.22175 0.80762 0.95728 0.99326 1.86440 1.21681 1.44888 1.86950 1.22793 0.97842 0.99637 0.95229 1.21887 0.84145 0.92373 0.99687 1.44819 1.02511 1.67081 1.19399 1.19736 0.84518 1.31530 0.98973 0.88368 1.25632 1.00663 1.02456 0.98216 1.70021 1.28431 1.48729 1.13351 0.85151 0.79850 0.77903 0.76979 1.21882 1.22457 1.19011 0.93564 0.93042 0.92056 0.93570 0.89753 0.92685 0.91609 0.75426 0.91471 0.92204 0.90342 1.00387 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 8.80 71.98 0.63 -4.66 16 2 C -0.12 -4.18 4.38 30.59 0.13 -4.04 16 3 C 0.16 6.47 3.18 45.34 0.14 6.61 16 4 H 0.03 1.16 8.09 -2.39 -0.02 1.14 16 5 C -0.09 -3.35 3.14 -9.60 -0.03 -3.38 16 6 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 7 C 0.10 2.61 5.10 71.98 0.37 2.98 16 8 O -0.59 -15.00 13.55 -148.98 -2.02 -17.02 16 9 C -0.12 -4.75 6.45 32.06 0.21 -4.55 16 10 C 0.14 7.50 6.00 86.93 0.52 8.02 16 11 N -0.61 -31.60 3.15 -667.83 -2.10 -33.70 16 12 C -0.22 -12.03 8.67 84.04 0.73 -11.30 16 13 H 0.10 5.08 5.39 -2.91 -0.02 5.06 16 14 C -0.08 -4.49 5.49 84.87 0.47 -4.02 16 15 N -0.95 -58.22 10.05 21.65 0.22 -58.00 16 16 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 17 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H 0.05 1.54 8.06 -2.39 -0.02 1.52 16 21 H 0.05 2.12 5.24 -2.39 -0.01 2.11 16 22 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.05 1.71 7.88 -2.38 -0.02 1.69 16 24 H 0.08 2.23 6.20 -2.39 -0.01 2.21 16 25 H 0.05 1.43 6.87 -2.39 -0.02 1.41 16 26 H 0.07 1.46 7.41 -2.39 -0.02 1.44 16 27 H 0.40 5.60 9.12 -74.05 -0.68 4.92 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.06 2.39 7.98 -2.39 -0.02 2.37 16 30 H 0.08 4.62 5.70 -2.39 -0.01 4.61 16 31 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 32 H 0.24 14.47 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -66.65 247.65 1.72 -64.93 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.43 Total: 9.92 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 3.17 Total: -14.34 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -1.88 Total: -91.70 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -2.02 Total: -17.02 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -66.65 1.72 -64.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307077532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.209 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds