Wall clock time and date at job start Mon Mar 30 2020 02:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47057 * 2 1 4 4 H 1.08988 * 109.99804 * 304.00625 * 3 2 1 5 5 C 1.54315 * 109.98454 * 182.97855 * 3 2 1 6 6 H 1.09002 * 110.92557 * 144.63347 * 5 3 2 7 7 C 1.52998 * 110.74590 * 21.37977 * 5 3 2 8 8 O 1.42896 * 109.47586 * 180.10827 * 7 5 3 9 9 C 1.55158 * 102.86441 * 263.04810 * 5 3 2 10 10 C 1.54908 * 101.58189 * 324.30378 * 9 5 3 11 11 N 1.47022 * 109.88221 * 65.10680 * 3 2 1 12 12 C 1.36934 * 125.64366 * 300.50965 * 11 3 2 13 13 H 1.08007 * 119.99606 * 139.43943 * 12 11 3 14 14 C 1.38811 * 120.00319 * 319.15893 * 12 11 3 15 15 N 1.31623 * 119.99684 * 164.00943 * 14 12 11 16 16 Si 1.86795 * 119.99990 * 344.01542 * 14 12 11 17 17 H 1.48497 * 109.47459 * 95.09295 * 16 14 12 18 18 H 1.48501 * 109.47266 * 215.09899 * 16 14 12 19 19 H 1.48504 * 109.47247 * 335.09366 * 16 14 12 20 20 H 1.08998 * 109.47494 * 291.15510 * 1 2 3 21 21 H 1.09001 * 109.46966 * 51.15233 * 1 2 3 22 22 H 1.08998 * 109.47349 * 171.15153 * 1 2 3 23 23 H 1.09002 * 109.47587 * 240.00200 * 2 1 3 24 24 H 1.08998 * 109.47340 * 119.99774 * 2 1 3 25 25 H 1.09005 * 109.47374 * 300.10563 * 7 5 3 26 26 H 1.08998 * 109.47119 * 60.10453 * 7 5 3 27 27 H 0.96695 * 114.00278 * 180.02562 * 8 7 5 28 28 H 1.09003 * 111.00204 * 206.22737 * 9 5 3 29 29 H 1.08994 * 111.03627 * 82.39584 * 9 5 3 30 30 H 1.08998 * 110.36855 * 278.17341 * 10 9 5 31 31 H 1.09001 * 110.36693 * 155.84528 * 10 9 5 32 32 H 0.97004 * 119.99121 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6242 1.9849 -0.8490 5 6 3.5812 1.4571 -0.0754 6 1 3.9341 2.3010 -0.6681 7 6 4.1083 0.1391 -0.6464 8 8 5.5356 0.1809 -0.7017 9 6 3.9982 1.6173 1.4105 10 6 2.8821 2.5473 1.9482 11 7 1.6579 2.1080 1.2541 12 6 0.3773 2.2850 1.7056 13 1 0.1508 2.1518 2.7532 14 6 -0.6285 2.6415 0.8178 15 7 -1.8909 2.5082 1.1657 16 14 -0.1905 3.3103 -0.8704 17 1 -0.2002 2.2027 -1.8595 18 1 -1.1850 4.3386 -1.2688 19 1 1.1622 3.9214 -0.8251 20 1 -0.3634 0.3709 0.9584 21 1 -0.3633 0.6446 -0.8004 22 1 -0.3634 -1.0154 -0.1581 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7935 -0.6857 -0.0069 26 1 3.7099 -0.0070 -1.6503 27 1 5.9392 -0.6237 -1.0549 28 1 4.9759 2.0922 1.4928 29 1 3.9882 0.6568 1.9255 30 1 3.1040 3.5863 1.7048 31 1 2.7722 2.4243 3.0257 32 1 -2.5938 2.7576 0.5454 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307077542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:07 Heat of formation + Delta-G solvation = -27.162040 kcal Electronic energy + Delta-G solvation = -13900.541709 eV Core-core repulsion = 11668.869906 eV Total energy + Delta-G solvation = -2231.671803 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.82415 -36.20414 -32.93185 -32.08622 -30.39216 -27.66345 -25.26471 -23.52091 -21.86028 -20.20979 -18.99875 -17.18860 -16.67827 -15.64641 -14.85086 -14.25003 -13.82202 -13.44073 -13.01847 -12.62012 -12.49692 -11.87517 -11.81918 -11.38423 -11.21364 -10.86148 -10.43051 -10.36225 -10.25900 -9.99376 -9.77167 -9.71815 -9.52736 -9.23219 -8.28892 -6.69526 -5.99807 -3.42518 3.32873 3.46411 3.53550 4.38552 4.53973 5.04161 5.13190 5.34537 5.39013 5.61736 5.76070 5.81939 5.89815 5.99141 6.12265 6.26867 6.35199 6.45170 6.54600 6.67748 6.80755 6.81664 6.95447 6.98012 7.21541 7.74998 7.77012 8.05039 8.36570 8.89498 9.67824 10.31974 11.15352 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042781 B = 0.014044 C = 0.013264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.333650 B = 1993.221976 C = 2110.529718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.122 4.122 3 C 0.155 3.845 4 H 0.033 0.967 5 C -0.099 4.099 6 H 0.075 0.925 7 C 0.086 3.914 8 O -0.576 6.576 9 C -0.117 4.117 10 C 0.126 3.874 11 N -0.602 5.602 12 C -0.247 4.247 13 H 0.081 0.919 14 C 0.048 3.952 15 N -0.902 5.902 16 Si 0.879 3.121 17 H -0.280 1.280 18 H -0.303 1.303 19 H -0.271 1.271 20 H 0.109 0.891 21 H 0.044 0.956 22 H 0.022 0.978 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.372 0.628 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.046 0.954 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.254 -4.944 -3.680 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.161 4.161 3 C 0.050 3.950 4 H 0.050 0.950 5 C -0.118 4.118 6 H 0.093 0.907 7 C 0.009 3.991 8 O -0.381 6.381 9 C -0.156 4.156 10 C 0.001 3.999 11 N -0.328 5.328 12 C -0.375 4.375 13 H 0.098 0.902 14 C -0.154 4.154 15 N -0.543 5.543 16 Si 0.710 3.290 17 H -0.207 1.207 18 H -0.231 1.231 19 H -0.196 1.196 20 H 0.128 0.872 21 H 0.062 0.938 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.218 0.782 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.864 -4.291 -3.414 11.286 hybrid contribution 0.125 -0.165 -1.415 1.430 sum 9.990 -4.455 -4.829 11.957 Atomic orbital electron populations 1.22224 0.94833 0.98562 1.06270 1.21926 0.97766 0.97150 0.99221 1.21180 0.90124 0.92651 0.91094 0.94997 1.22136 0.96013 0.96364 0.97312 0.90657 1.22349 0.79710 0.98053 0.99002 1.86478 1.20632 1.43064 1.87913 1.22686 0.98134 1.00197 0.94558 1.21746 0.86668 0.95067 0.96448 1.44633 1.02039 1.64574 1.21584 1.18396 0.81260 1.42310 0.95487 0.90161 1.25468 0.95052 0.96800 0.98037 1.69803 0.98715 1.49167 1.36600 0.87053 0.77585 0.78778 0.85537 1.20738 1.23126 1.19639 0.87248 0.93753 0.95899 0.94252 0.92532 0.92890 0.93935 0.78208 0.91746 0.91698 0.95934 0.93555 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.21 37.15 0.31 -3.39 16 2 C -0.12 -2.46 4.36 -26.73 -0.12 -2.58 16 3 C 0.16 3.40 2.37 -66.95 -0.16 3.24 16 4 H 0.03 0.78 3.86 -51.94 -0.20 0.58 16 5 C -0.10 -1.82 3.16 -88.79 -0.28 -2.10 16 6 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 7 C 0.09 1.30 5.15 37.16 0.19 1.49 16 8 O -0.58 -7.95 13.51 -35.23 -0.48 -8.43 16 9 C -0.12 -2.08 6.38 -24.58 -0.16 -2.24 16 10 C 0.13 2.62 7.23 -2.53 -0.02 2.60 16 11 N -0.60 -14.61 2.60 -162.58 -0.42 -15.03 16 12 C -0.25 -6.83 8.31 -15.06 -0.13 -6.95 16 13 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 14 C 0.05 1.34 3.35 -17.43 -0.06 1.28 16 15 N -0.90 -26.71 13.94 55.49 0.77 -25.94 16 16 Si 0.88 22.75 23.06 -169.99 -3.92 18.83 16 17 H -0.28 -7.02 6.11 56.52 0.35 -6.67 16 18 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 19 H -0.27 -7.03 6.94 56.52 0.39 -6.64 16 20 H 0.11 2.86 5.07 -51.93 -0.26 2.60 16 21 H 0.04 1.07 4.85 -51.93 -0.25 0.82 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 24 H 0.06 1.12 7.75 -51.93 -0.40 0.72 16 25 H 0.05 0.77 6.69 -51.93 -0.35 0.42 16 26 H 0.04 0.60 7.59 -51.93 -0.39 0.21 16 27 H 0.37 3.21 9.12 45.56 0.42 3.62 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.11 8.02 -51.93 -0.42 0.70 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 238.28 15.07 3.59 3.59 Total: -1.00 -30.33 238.28 -4.80 -35.14 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.93 Total: 0.49 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.42 Total: -8.65 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.35 Total: -40.97 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.48 Total: -8.43 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -3.92 Total: 18.83 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.33 -4.80 -35.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307077542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.976 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds