Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47081 * 2 1 4 4 H 1.09005 * 109.87039 * 307.36257 * 3 2 1 5 5 C 1.54329 * 109.88149 * 186.34982 * 3 2 1 6 6 H 1.09001 * 110.71544 * 336.59350 * 5 3 2 7 7 C 1.52990 * 110.71940 * 99.87217 * 5 3 2 8 8 O 1.42904 * 109.46838 * 179.97438 * 7 5 3 9 9 C 1.55157 * 102.93929 * 218.23328 * 5 3 2 10 10 C 1.54913 * 101.58265 * 35.50165 * 9 5 3 11 11 N 1.47290 * 110.00144 * 68.42297 * 3 2 1 12 12 C 1.36932 * 125.79597 * 298.42874 * 11 3 2 13 13 H 1.08000 * 119.99595 * 343.05816 * 12 11 3 14 14 C 1.38809 * 120.00248 * 163.05816 * 12 11 3 15 15 N 1.31621 * 119.99934 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00167 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47064 * 60.00401 * 16 14 12 18 18 H 1.48503 * 109.46919 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47127 * 300.00028 * 16 14 12 20 20 H 1.08997 * 109.46847 * 293.46223 * 1 2 3 21 21 H 1.08997 * 109.46897 * 53.46679 * 1 2 3 22 22 H 1.09001 * 109.46684 * 173.46563 * 1 2 3 23 23 H 1.08998 * 109.46681 * 239.99688 * 2 1 3 24 24 H 1.08999 * 109.46974 * 119.99997 * 2 1 3 25 25 H 1.08999 * 109.47388 * 299.97213 * 7 5 3 26 26 H 1.08995 * 109.47810 * 59.97742 * 7 5 3 27 27 H 0.96703 * 114.00222 * 179.97438 * 8 7 5 28 28 H 1.08995 * 111.00598 * 277.42934 * 9 5 3 29 29 H 1.09003 * 111.03759 * 153.58654 * 9 5 3 30 30 H 1.09004 * 110.37008 * 81.82743 * 10 9 5 31 31 H 1.09001 * 110.36890 * 204.04163 * 10 9 5 32 32 H 0.96998 * 120.00036 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5770 1.9991 -0.8148 5 6 3.5749 1.4565 -0.1605 6 1 4.0054 0.5101 0.1667 7 6 3.9649 1.7585 -1.6087 8 8 5.3891 1.7656 -1.7268 9 6 4.0118 2.6121 0.7781 10 6 2.9936 2.4731 1.9373 11 7 1.7281 2.0871 1.2871 12 6 0.4738 2.2941 1.7959 13 1 -0.3884 2.2330 1.1484 14 6 0.3105 2.5825 3.1439 15 7 1.3614 2.6575 3.9328 16 14 -1.4006 2.8642 3.8382 17 1 -2.2261 1.6476 3.6291 18 1 -1.3038 3.1522 5.2918 19 1 -2.0323 4.0161 3.1458 20 1 -0.3633 0.4092 0.9427 21 1 -0.3633 0.6117 -0.8257 22 1 -0.3633 -1.0210 -0.1170 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.5498 0.9929 -2.2641 26 1 3.5718 2.7340 -1.8951 27 1 5.7087 1.9507 -2.6205 28 1 3.9102 3.5776 0.2826 29 1 5.0314 2.4631 1.1337 30 1 3.3144 1.6978 2.6332 31 1 2.8783 3.4243 2.4571 32 1 1.2472 2.8586 4.8749 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307077554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -38.915312 kcal Electronic energy + Delta-G solvation = -13539.295354 eV Core-core repulsion = 11307.113890 eV Total energy + Delta-G solvation = -2232.181463 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.32419 -36.10590 -32.69004 -32.20762 -29.66936 -27.47711 -25.46289 -23.25154 -21.60350 -19.74520 -19.18800 -17.00850 -16.65644 -15.35410 -14.59670 -14.18549 -13.71025 -13.36748 -12.65370 -12.41502 -12.23564 -11.79527 -11.49138 -11.09536 -10.91159 -10.78134 -10.71770 -10.28057 -10.08683 -9.95507 -9.77037 -9.63430 -9.42803 -9.30783 -8.47603 -6.68680 -5.69764 -3.04111 3.41581 3.46300 3.47204 4.41850 4.59289 5.31666 5.37706 5.49167 5.56516 5.82217 5.84856 5.91237 6.07805 6.16996 6.21770 6.34061 6.50837 6.59948 6.69679 6.81273 6.84350 6.90219 7.25110 7.28414 7.59767 7.71870 7.83375 7.85626 8.34922 9.25322 9.86800 10.58974 11.43101 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045773 B = 0.011339 C = 0.009628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.573940 B = 2468.725123 C = 2907.483528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.168 3.832 4 H 0.031 0.969 5 C -0.097 4.097 6 H 0.076 0.924 7 C 0.088 3.912 8 O -0.573 6.573 9 C -0.134 4.134 10 C 0.172 3.828 11 N -0.594 5.594 12 C -0.223 4.223 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.916 5.916 16 Si 0.905 3.095 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.285 1.285 20 H 0.087 0.913 21 H 0.039 0.961 22 H 0.031 0.969 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.371 0.629 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -2.065 -9.321 10.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.061 3.939 4 H 0.049 0.951 5 C -0.116 4.116 6 H 0.095 0.905 7 C 0.011 3.989 8 O -0.377 6.377 9 C -0.173 4.173 10 C 0.047 3.953 11 N -0.319 5.319 12 C -0.351 4.351 13 H 0.095 0.905 14 C -0.203 4.203 15 N -0.563 5.563 16 Si 0.736 3.264 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.212 1.212 20 H 0.105 0.895 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.216 0.784 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.204 -2.134 -8.441 9.278 hybrid contribution -0.902 0.164 -0.193 0.937 sum 2.302 -1.970 -8.634 9.150 Atomic orbital electron populations 1.21948 0.96279 0.99191 1.03650 1.21943 0.96454 0.98399 0.99709 1.20928 0.90604 0.91850 0.90540 0.95116 1.22147 0.96532 0.99966 0.92929 0.90547 1.22215 0.80234 0.99098 0.97394 1.86517 1.22121 1.94916 1.34164 1.22971 0.99353 0.96629 0.98339 1.21400 0.83180 0.99775 0.90906 1.44516 1.02475 1.66809 1.18101 1.18935 0.83410 1.41442 0.91346 0.90469 1.24945 0.97089 1.02255 0.95998 1.69934 1.27325 1.54326 1.04670 0.86306 0.83990 0.78044 0.78092 1.21082 1.21643 1.21174 0.89456 0.94233 0.95023 0.94315 0.92351 0.94213 0.93781 0.78385 0.92600 0.92287 0.95621 0.91703 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.10 37.16 0.34 -2.62 16 2 C -0.13 -2.45 5.44 -26.73 -0.15 -2.59 16 3 C 0.17 3.53 2.82 -66.81 -0.19 3.34 16 4 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 5 C -0.10 -1.82 2.76 -88.79 -0.25 -2.06 16 6 H 0.08 1.47 7.85 -51.93 -0.41 1.06 16 7 C 0.09 1.35 6.33 37.15 0.24 1.58 16 8 O -0.57 -8.26 13.51 -35.23 -0.48 -8.74 16 9 C -0.13 -2.74 6.39 -24.58 -0.16 -2.89 16 10 C 0.17 4.30 5.38 -2.53 -0.01 4.29 16 11 N -0.59 -15.12 3.14 -162.37 -0.51 -15.63 16 12 C -0.22 -6.08 8.03 -15.06 -0.12 -6.20 16 13 H 0.08 2.03 6.49 -52.49 -0.34 1.69 16 14 C -0.01 -0.17 5.46 -17.43 -0.10 -0.26 16 15 N -0.92 -27.03 10.67 55.49 0.59 -26.44 16 16 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H 0.09 1.95 5.27 -51.93 -0.27 1.67 16 21 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.37 3.34 9.12 45.56 0.42 3.76 16 28 H 0.06 1.11 8.02 -51.93 -0.42 0.70 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.70 8.01 -51.93 -0.42 0.28 16 31 H 0.06 1.78 7.09 -51.93 -0.37 1.41 16 32 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 254.81 15.07 3.84 3.84 Total: -1.00 -30.46 254.81 -6.27 -36.73 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.30 Total: 0.66 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.39 Total: -7.42 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.08 Total: -42.07 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.48 Total: -8.74 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.46 -6.27 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307077554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.180 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds