Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47081 * 2 1 4 4 H 1.09005 * 109.87039 * 307.36257 * 3 2 1 5 5 C 1.54329 * 109.88149 * 186.34982 * 3 2 1 6 6 H 1.09001 * 110.71544 * 336.59350 * 5 3 2 7 7 C 1.52990 * 110.71940 * 99.87217 * 5 3 2 8 8 O 1.42904 * 109.46838 * 179.97438 * 7 5 3 9 9 C 1.55157 * 102.93929 * 218.23328 * 5 3 2 10 10 C 1.54913 * 101.58265 * 35.50165 * 9 5 3 11 11 N 1.47290 * 110.00144 * 68.42297 * 3 2 1 12 12 C 1.36932 * 125.79597 * 298.42874 * 11 3 2 13 13 H 1.08000 * 119.99595 * 343.05816 * 12 11 3 14 14 C 1.38809 * 120.00248 * 163.05816 * 12 11 3 15 15 N 1.31621 * 119.99934 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00167 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47064 * 60.00401 * 16 14 12 18 18 H 1.48503 * 109.46919 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47127 * 300.00028 * 16 14 12 20 20 H 1.08997 * 109.46847 * 293.46223 * 1 2 3 21 21 H 1.08997 * 109.46897 * 53.46679 * 1 2 3 22 22 H 1.09001 * 109.46684 * 173.46563 * 1 2 3 23 23 H 1.08998 * 109.46681 * 239.99688 * 2 1 3 24 24 H 1.08999 * 109.46974 * 119.99997 * 2 1 3 25 25 H 1.08999 * 109.47388 * 299.97213 * 7 5 3 26 26 H 1.08995 * 109.47810 * 59.97742 * 7 5 3 27 27 H 0.96703 * 114.00222 * 179.97438 * 8 7 5 28 28 H 1.08995 * 111.00598 * 277.42934 * 9 5 3 29 29 H 1.09003 * 111.03759 * 153.58654 * 9 5 3 30 30 H 1.09004 * 110.37008 * 81.82743 * 10 9 5 31 31 H 1.09001 * 110.36890 * 204.04163 * 10 9 5 32 32 H 0.96998 * 120.00036 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5770 1.9991 -0.8148 5 6 3.5749 1.4565 -0.1605 6 1 4.0054 0.5101 0.1667 7 6 3.9649 1.7585 -1.6087 8 8 5.3891 1.7656 -1.7268 9 6 4.0118 2.6121 0.7781 10 6 2.9936 2.4731 1.9373 11 7 1.7281 2.0871 1.2871 12 6 0.4738 2.2941 1.7959 13 1 -0.3884 2.2330 1.1484 14 6 0.3105 2.5825 3.1439 15 7 1.3614 2.6575 3.9328 16 14 -1.4006 2.8642 3.8382 17 1 -2.2261 1.6476 3.6291 18 1 -1.3038 3.1522 5.2918 19 1 -2.0323 4.0161 3.1458 20 1 -0.3633 0.4092 0.9427 21 1 -0.3633 0.6117 -0.8257 22 1 -0.3633 -1.0210 -0.1170 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.5498 0.9929 -2.2641 26 1 3.5718 2.7340 -1.8951 27 1 5.7087 1.9507 -2.6205 28 1 3.9102 3.5776 0.2826 29 1 5.0314 2.4631 1.1337 30 1 3.3144 1.6978 2.6332 31 1 2.8783 3.4243 2.4571 32 1 1.2472 2.8586 4.8749 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307077554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -60.626536 kcal Electronic energy + Delta-G solvation = -13540.236823 eV Core-core repulsion = 11307.113890 eV Total energy + Delta-G solvation = -2233.122933 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95706 -37.36143 -34.63177 -33.83228 -31.51971 -29.17408 -27.22139 -24.93290 -23.32131 -21.44665 -20.82122 -18.72847 -18.10359 -17.07279 -16.28348 -15.88346 -15.34055 -14.85051 -14.27408 -14.08903 -13.86398 -13.48645 -13.23639 -12.85488 -12.76363 -12.61261 -12.40576 -12.03496 -11.93349 -11.43950 -11.39767 -11.29976 -11.14495 -10.73400 -10.55525 -8.74426 -7.82001 -5.17696 1.46092 1.48753 1.54635 2.51516 3.29606 3.41295 3.69212 3.90508 4.14911 4.25019 4.45065 4.49763 4.56532 4.65846 4.69522 4.76235 4.87993 4.99975 5.16658 5.20160 5.23778 5.32582 5.51439 5.64805 5.66450 5.72481 5.76954 6.28886 7.02282 7.14047 7.82786 8.53211 9.30575 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045773 B = 0.011339 C = 0.009628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.573940 B = 2468.725123 C = 2907.483528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.161 3.839 4 H 0.041 0.959 5 C -0.091 4.091 6 H 0.071 0.929 7 C 0.098 3.902 8 O -0.589 6.589 9 C -0.121 4.121 10 C 0.178 3.822 11 N -0.614 5.614 12 C -0.220 4.220 13 H 0.086 0.914 14 C -0.069 4.069 15 N -0.952 5.952 16 Si 0.969 3.031 17 H -0.276 1.276 18 H -0.298 1.298 19 H -0.277 1.277 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.396 0.604 28 H 0.062 0.938 29 H 0.068 0.932 30 H -0.009 1.009 31 H 0.028 0.972 32 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 -2.601 -11.798 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C 0.055 3.945 4 H 0.059 0.941 5 C -0.110 4.110 6 H 0.089 0.911 7 C 0.020 3.980 8 O -0.397 6.397 9 C -0.159 4.159 10 C 0.053 3.947 11 N -0.339 5.339 12 C -0.349 4.349 13 H 0.104 0.896 14 C -0.262 4.262 15 N -0.601 5.601 16 Si 0.797 3.203 17 H -0.202 1.202 18 H -0.225 1.225 19 H -0.203 1.203 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.246 0.754 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.009 0.991 31 H 0.047 0.953 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.974 -2.679 -10.982 11.688 hybrid contribution -0.787 0.309 0.505 0.984 sum 2.187 -2.370 -10.477 10.962 Atomic orbital electron populations 1.21862 0.96027 1.00704 1.02114 1.21871 0.96660 0.97275 1.00229 1.21153 0.92447 0.92466 0.88392 0.94102 1.22098 0.94761 0.98796 0.95347 0.91072 1.22009 0.81015 1.00291 0.94652 1.86446 1.21443 1.95058 1.36737 1.22803 0.98302 0.97967 0.96849 1.21143 0.84814 0.96691 0.92047 1.44812 1.01981 1.67580 1.19507 1.19308 0.84545 1.39498 0.91533 0.89629 1.25733 1.00479 1.03339 0.96638 1.70152 1.29214 1.56395 1.04329 0.85297 0.79998 0.78256 0.76735 1.20199 1.22492 1.20262 0.93066 0.92890 0.92671 0.90569 0.94883 0.91679 0.93119 0.75400 0.91879 0.91293 0.99056 0.95308 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 9.10 71.98 0.65 -4.78 16 2 C -0.12 -4.46 5.44 30.59 0.17 -4.29 16 3 C 0.16 6.49 2.82 45.29 0.13 6.62 16 4 H 0.04 1.59 7.81 -2.38 -0.02 1.57 16 5 C -0.09 -3.22 2.76 -9.61 -0.03 -3.25 16 6 H 0.07 2.60 7.85 -2.39 -0.02 2.58 16 7 C 0.10 2.59 6.33 71.98 0.46 3.05 16 8 O -0.59 -14.68 13.51 -148.98 -2.01 -16.70 16 9 C -0.12 -4.83 6.39 31.99 0.20 -4.63 16 10 C 0.18 9.20 5.38 86.86 0.47 9.66 16 11 N -0.61 -31.49 3.14 -667.60 -2.10 -33.58 16 12 C -0.22 -12.09 8.03 84.03 0.67 -11.42 16 13 H 0.09 4.47 6.49 -2.91 -0.02 4.46 16 14 C -0.07 -3.96 5.46 84.86 0.46 -3.50 16 15 N -0.95 -58.53 10.67 21.65 0.23 -58.30 16 16 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H 0.05 2.23 5.27 -2.39 -0.01 2.22 16 21 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 27 H 0.40 5.45 9.12 -74.06 -0.68 4.77 16 28 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H -0.01 -0.49 8.01 -2.39 -0.02 -0.51 16 31 H 0.03 1.65 7.09 -2.39 -0.02 1.64 16 32 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -66.98 254.81 1.75 -65.22 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.41 Total: 7.74 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 3.19 Total: -12.53 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -1.86 Total: -91.88 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -2.01 Total: -16.70 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -66.98 1.75 -65.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307077554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.596 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds