Wall clock time and date at job start Mon Mar 30 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47584 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00043 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.53002 * 109.47415 * 119.99908 * 2 1 3 13 13 H 1.09004 * 109.45936 * 64.98354 * 12 2 1 14 14 C 1.53040 * 109.46321 * 184.94582 * 12 2 1 15 15 C 1.53116 * 109.27438 * 179.19816 * 14 12 2 16 16 C 1.53114 * 109.16255 * 302.34272 * 15 14 12 17 17 C 1.53044 * 109.27759 * 57.65874 * 16 15 14 18 18 N 1.46845 * 109.46144 * 304.99956 * 12 2 1 19 19 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47045 * 300.00023 * 1 2 3 21 21 H 1.09001 * 109.46922 * 59.99815 * 1 2 3 22 22 H 0.96695 * 114.00613 * 180.02562 * 3 2 1 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.50443 * 299.13770 * 14 12 2 25 25 H 1.08994 * 109.50226 * 59.25866 * 14 12 2 26 26 H 1.09005 * 109.52090 * 182.44197 * 15 14 12 27 27 H 1.09000 * 109.57757 * 62.28502 * 15 14 12 28 28 H 1.09000 * 109.50671 * 297.71961 * 16 15 14 29 29 H 1.08999 * 109.50772 * 177.60110 * 16 15 14 30 30 H 1.08999 * 109.46432 * 180.80586 * 17 16 15 31 31 H 1.09001 * 109.45190 * 60.83026 * 17 16 15 32 32 H 1.00888 * 111.00119 * 302.33624 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2798 -2.6542 9 1 -0.8021 0.8745 -2.6993 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9071 12 6 2.0401 -0.7212 1.2492 13 1 1.7514 -1.7714 1.2056 14 6 3.5654 -0.6142 1.3127 15 6 4.0695 -1.3200 2.5746 16 6 3.4077 -0.6880 3.8023 17 6 1.8869 -0.7929 3.6666 18 7 1.4544 -0.1020 2.4451 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 2.9704 1.4236 -0.0004 23 1 1.9026 -0.5283 -4.4375 24 1 4.0004 -1.0877 0.4326 25 1 3.8556 0.4359 1.3426 26 1 5.1515 -1.2089 2.6465 27 1 3.8143 -2.3786 2.5276 28 1 3.6954 0.3610 3.8713 29 1 3.7300 -1.2142 4.7008 30 1 1.4123 -0.3311 4.5324 31 1 1.5989 -1.8427 3.6114 32 1 1.6757 0.8814 2.4882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307153457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:23 Heat of formation + Delta-G solvation = -54.890549 kcal Electronic energy + Delta-G solvation = -13856.257975 eV Core-core repulsion = 11623.383773 eV Total energy + Delta-G solvation = -2232.874202 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.93051 -35.88064 -32.29181 -31.50959 -30.73594 -28.91477 -25.14558 -23.25119 -22.52955 -20.06160 -19.28133 -17.26286 -15.66111 -14.91478 -14.54716 -14.36104 -14.07855 -13.27594 -13.12946 -12.69967 -12.25360 -12.06650 -11.58550 -11.38650 -11.29898 -11.25540 -10.74898 -10.50183 -10.24638 -10.11552 -9.84006 -9.80785 -8.80846 -8.55442 -8.11499 -7.71119 -6.08837 -4.18609 3.42921 3.54045 3.78454 4.56412 4.79690 5.07125 5.21198 5.25096 5.34120 5.58883 5.70924 5.78142 5.84036 5.99536 6.06685 6.16817 6.34711 6.38122 6.43804 6.65147 6.77290 6.78032 6.87742 7.08399 7.47186 7.54521 7.78297 7.99885 8.33436 8.86486 9.05877 9.57112 11.01665 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053859 B = 0.012482 C = 0.011296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.747620 B = 2242.653020 C = 2478.194971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.223 3.777 3 O -0.578 6.578 4 C -0.551 4.551 5 H 0.073 0.927 6 C 0.082 3.918 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.291 1.291 10 H -0.218 1.218 11 H -0.310 1.310 12 C 0.080 3.920 13 H 0.076 0.924 14 C -0.147 4.147 15 C -0.119 4.119 16 C -0.156 4.156 17 C 0.057 3.943 18 N -0.679 5.679 19 H 0.056 0.944 20 H 0.048 0.952 21 H 0.038 0.962 22 H 0.354 0.646 23 H 0.264 0.736 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 1.461 11.756 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.184 3.816 3 O -0.385 6.385 4 C -0.589 4.589 5 H 0.091 0.909 6 C -0.121 4.121 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.219 1.219 10 H -0.141 1.141 11 H -0.238 1.238 12 C -0.030 4.030 13 H 0.094 0.906 14 C -0.186 4.186 15 C -0.156 4.156 16 C -0.196 4.196 17 C -0.073 4.073 18 N -0.308 5.308 19 H 0.075 0.925 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.201 0.799 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.136 1.224 11.546 11.612 hybrid contribution 1.089 0.660 -0.269 1.301 sum 1.225 1.884 11.277 11.499 Atomic orbital electron populations 1.21755 0.95818 1.00707 0.99514 1.19149 0.91486 0.79741 0.91223 1.86620 1.24885 1.30113 1.96871 1.21402 1.33860 1.14237 0.89391 0.90865 1.24996 0.94841 0.96779 0.95526 1.69954 1.44787 1.40367 0.98089 0.87039 0.79148 0.84755 0.77659 1.21898 1.14129 1.23837 1.22095 0.90963 0.99358 0.90563 0.90583 1.22186 0.98486 1.00218 0.97755 1.21573 0.99172 0.99803 0.95097 1.22268 0.98463 1.00712 0.98128 1.21983 0.92191 0.99799 0.93316 1.60703 1.61594 1.07098 1.01423 0.92497 0.93302 0.94365 0.79944 0.92694 0.90145 0.92580 0.92808 0.92336 0.92439 0.92464 0.91694 0.91540 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 8.15 37.16 0.30 -2.44 16 2 C 0.22 5.07 0.48 -91.77 -0.04 5.03 16 3 O -0.58 -12.84 9.26 -35.23 -0.33 -13.16 16 4 C -0.55 -14.93 8.13 -34.44 -0.28 -15.21 16 5 H 0.07 2.14 7.30 -52.49 -0.38 1.75 16 6 C 0.08 2.36 5.45 -17.82 -0.10 2.27 16 7 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 8 Si 0.88 22.58 23.91 -169.99 -4.06 18.52 16 9 H -0.29 -7.43 6.87 56.52 0.39 -7.04 16 10 H -0.22 -5.43 5.30 56.52 0.30 -5.13 16 11 H -0.31 -8.05 7.11 56.52 0.40 -7.65 16 12 C 0.08 1.54 1.78 -67.72 -0.12 1.42 16 13 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 14 C -0.15 -2.57 4.75 -26.65 -0.13 -2.70 16 15 C -0.12 -1.73 6.00 -26.61 -0.16 -1.89 16 16 C -0.16 -2.03 6.08 -26.65 -0.16 -2.19 16 17 C 0.06 0.80 6.55 -3.83 -0.03 0.78 16 18 N -0.68 -11.48 5.52 -106.75 -0.59 -12.07 16 19 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 20 H 0.05 1.02 7.47 -51.93 -0.39 0.63 16 21 H 0.04 0.91 3.27 -51.93 -0.17 0.75 16 22 H 0.35 7.10 7.17 45.56 0.33 7.42 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 24 H 0.08 1.58 6.97 -51.93 -0.36 1.22 16 25 H 0.06 0.94 6.68 -51.93 -0.35 0.59 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.34 5.71 8.37 -39.30 -0.33 5.38 16 LS Contribution 239.98 15.07 3.62 3.62 Total: -1.00 -29.55 239.98 -5.59 -35.14 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.28 Total: 9.38 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.71 Total: -14.93 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.18 Total: -38.57 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.33 Total: -13.16 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.06 Total: 18.52 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.55 -5.59 -35.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307153457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.748 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds