Wall clock time and date at job start Mon Mar 30 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47584 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00043 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.53002 * 109.47415 * 119.99908 * 2 1 3 13 13 H 1.09004 * 109.45936 * 64.98354 * 12 2 1 14 14 C 1.53040 * 109.46321 * 184.94582 * 12 2 1 15 15 C 1.53116 * 109.27438 * 179.19816 * 14 12 2 16 16 C 1.53114 * 109.16255 * 302.34272 * 15 14 12 17 17 C 1.53044 * 109.27759 * 57.65874 * 16 15 14 18 18 N 1.46845 * 109.46144 * 304.99956 * 12 2 1 19 19 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47045 * 300.00023 * 1 2 3 21 21 H 1.09001 * 109.46922 * 59.99815 * 1 2 3 22 22 H 0.96695 * 114.00613 * 180.02562 * 3 2 1 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.50443 * 299.13770 * 14 12 2 25 25 H 1.08994 * 109.50226 * 59.25866 * 14 12 2 26 26 H 1.09005 * 109.52090 * 182.44197 * 15 14 12 27 27 H 1.09000 * 109.57757 * 62.28502 * 15 14 12 28 28 H 1.09000 * 109.50671 * 297.71961 * 16 15 14 29 29 H 1.08999 * 109.50772 * 177.60110 * 16 15 14 30 30 H 1.08999 * 109.46432 * 180.80586 * 17 16 15 31 31 H 1.09001 * 109.45190 * 60.83026 * 17 16 15 32 32 H 1.00888 * 111.00119 * 302.33624 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2798 -2.6542 9 1 -0.8021 0.8745 -2.6993 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9071 12 6 2.0401 -0.7212 1.2492 13 1 1.7514 -1.7714 1.2056 14 6 3.5654 -0.6142 1.3127 15 6 4.0695 -1.3200 2.5746 16 6 3.4077 -0.6880 3.8023 17 6 1.8869 -0.7929 3.6666 18 7 1.4544 -0.1020 2.4451 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 2.9704 1.4236 -0.0004 23 1 1.9026 -0.5283 -4.4375 24 1 4.0004 -1.0877 0.4326 25 1 3.8556 0.4359 1.3426 26 1 5.1515 -1.2089 2.6465 27 1 3.8143 -2.3786 2.5276 28 1 3.6954 0.3610 3.8713 29 1 3.7300 -1.2142 4.7008 30 1 1.4123 -0.3311 4.5324 31 1 1.5989 -1.8427 3.6114 32 1 1.6757 0.8814 2.4882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307153457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:23 Heat of formation + Delta-G solvation = -77.943702 kcal Electronic energy + Delta-G solvation = -13857.257635 eV Core-core repulsion = 11623.383773 eV Total energy + Delta-G solvation = -2233.873861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.42148 -37.48617 -34.42858 -32.95123 -32.23628 -30.48942 -27.15826 -24.78827 -23.82867 -21.40397 -20.94365 -19.25556 -17.33441 -16.93712 -15.96692 -15.71979 -15.40060 -14.88278 -14.78000 -14.42485 -14.04913 -13.60299 -13.40133 -13.09259 -12.87148 -12.64331 -12.26682 -12.02495 -11.89982 -11.75795 -11.49924 -11.33593 -10.80757 -10.72567 -9.95076 -9.04555 -8.31682 -6.42843 1.38354 1.46452 1.73737 2.43494 3.06489 3.46751 3.87787 3.94729 4.02374 4.15742 4.29148 4.47281 4.53684 4.69672 4.79271 4.91437 4.95653 5.07286 5.08995 5.15234 5.22894 5.28699 5.31825 5.46478 5.63428 5.70457 6.14506 6.30316 6.63739 6.72888 7.21845 7.39529 8.82529 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053859 B = 0.012482 C = 0.011296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.747620 B = 2242.653020 C = 2478.194971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.224 3.776 3 O -0.578 6.578 4 C -0.543 4.543 5 H 0.038 0.962 6 C 0.029 3.971 7 N -0.942 5.942 8 Si 0.942 3.058 9 H -0.290 1.290 10 H -0.203 1.203 11 H -0.317 1.317 12 C 0.091 3.909 13 H 0.056 0.944 14 C -0.143 4.143 15 C -0.116 4.116 16 C -0.148 4.148 17 C 0.056 3.944 18 N -0.682 5.682 19 H 0.054 0.946 20 H 0.070 0.930 21 H 0.025 0.975 22 H 0.364 0.636 23 H 0.264 0.736 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 2.654 14.166 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.185 3.815 3 O -0.385 6.385 4 C -0.581 4.581 5 H 0.057 0.943 6 C -0.170 4.170 7 N -0.582 5.582 8 Si 0.771 3.229 9 H -0.218 1.218 10 H -0.125 1.125 11 H -0.247 1.247 12 C -0.020 4.020 13 H 0.074 0.926 14 C -0.182 4.182 15 C -0.154 4.154 16 C -0.187 4.187 17 C -0.074 4.074 18 N -0.312 5.312 19 H 0.073 0.927 20 H 0.089 0.911 21 H 0.043 0.957 22 H 0.212 0.788 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.110 2.418 13.989 14.197 hybrid contribution 1.214 0.219 -0.971 1.570 sum 1.104 2.638 13.018 13.328 Atomic orbital electron populations 1.21745 0.95474 1.00762 0.99823 1.19033 0.91723 0.79837 0.90938 1.86551 1.25939 1.29213 1.96836 1.21723 1.32158 1.12981 0.91224 0.94335 1.25762 0.96282 0.99503 0.95430 1.70081 1.47084 1.42400 0.98651 0.86137 0.77436 0.81803 0.77542 1.21808 1.12480 1.24662 1.21728 0.92058 0.97746 0.90427 0.92591 1.22091 0.97142 1.00817 0.98173 1.21553 1.00186 0.99270 0.94368 1.22198 0.97251 1.01299 0.97951 1.22093 0.93261 0.99506 0.92528 1.60612 1.61723 1.07360 1.01501 0.92709 0.91140 0.95673 0.78787 0.92778 0.93437 0.91675 0.91401 0.92850 0.91696 0.90030 0.89261 0.91965 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.15 71.98 0.59 -4.70 16 2 C 0.22 9.98 0.48 -11.54 -0.01 9.97 16 3 O -0.58 -24.42 9.26 -148.98 -1.38 -25.80 16 4 C -0.54 -29.89 8.13 25.60 0.21 -29.68 16 5 H 0.04 2.34 7.30 -2.91 -0.02 2.32 16 6 C 0.03 1.69 5.45 84.66 0.46 2.15 16 7 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 8 Si 0.94 46.76 23.91 68.60 1.64 48.40 16 9 H -0.29 -14.26 6.87 99.48 0.68 -13.57 16 10 H -0.20 -9.46 5.30 99.48 0.53 -8.93 16 11 H -0.32 -16.01 7.11 99.48 0.71 -15.31 16 12 C 0.09 3.41 1.78 44.94 0.08 3.49 16 13 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 14 C -0.14 -4.85 4.75 30.65 0.15 -4.70 16 15 C -0.12 -3.12 6.00 30.67 0.18 -2.94 16 16 C -0.15 -3.26 6.08 30.65 0.19 -3.07 16 17 C 0.06 1.36 6.55 86.33 0.57 1.92 16 18 N -0.68 -21.16 5.52 -491.66 -2.72 -23.88 16 19 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 20 H 0.07 2.75 7.47 -2.39 -0.02 2.73 16 21 H 0.02 1.15 3.27 -2.39 -0.01 1.14 16 22 H 0.36 13.91 7.17 -74.06 -0.53 13.38 16 23 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 24 H 0.05 1.90 6.97 -2.39 -0.02 1.89 16 25 H 0.06 2.06 6.68 -2.39 -0.02 2.05 16 26 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.34 10.34 8.37 -89.70 -0.75 9.59 16 Total: -1.00 -63.35 239.98 -0.11 -63.46 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.37 Total: 24.08 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 2.41 Total: -27.56 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -2.42 Total: -82.59 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -1.38 Total: -25.80 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.64 Total: 48.40 kcal Total: -63.35 -0.11 -63.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307153457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.480 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds