Wall clock time and date at job start Mon Mar 30 2020 02:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47634 * 2 1 4 4 C 1.50698 * 109.46823 * 120.00196 * 2 1 3 5 5 H 1.08008 * 120.00098 * 115.22159 * 4 2 1 6 6 C 1.37877 * 120.00270 * 295.22181 * 4 2 1 7 7 N 1.31514 * 119.99627 * 353.91022 * 6 4 2 8 8 Si 1.86797 * 120.00186 * 173.91279 * 6 4 2 9 9 H 1.48495 * 109.47309 * 89.99983 * 8 6 4 10 10 H 1.48505 * 109.46917 * 209.99849 * 8 6 4 11 11 H 1.48504 * 109.47120 * 329.99835 * 8 6 4 12 12 C 1.53001 * 109.47131 * 240.00021 * 2 1 3 13 13 H 1.09002 * 109.45954 * 305.00010 * 12 2 1 14 14 C 1.53034 * 109.46469 * 64.98315 * 12 2 1 15 15 C 1.53112 * 109.28255 * 179.19745 * 14 12 2 16 16 C 1.53125 * 109.16069 * 302.34475 * 15 14 12 17 17 C 1.53040 * 109.27363 * 57.65173 * 16 15 14 18 18 N 1.46842 * 109.46286 * 185.02705 * 12 2 1 19 19 H 1.08999 * 109.47040 * 294.33598 * 1 2 3 20 20 H 1.09006 * 109.46609 * 54.33035 * 1 2 3 21 21 H 1.08996 * 109.47447 * 174.33040 * 1 2 3 22 22 H 0.96696 * 114.00214 * 179.97438 * 3 2 1 23 23 H 0.97001 * 120.00134 * 3.20515 * 7 6 4 24 24 H 1.09007 * 109.49844 * 299.13850 * 14 12 2 25 25 H 1.08998 * 109.50639 * 59.24795 * 14 12 2 26 26 H 1.09005 * 109.52471 * 62.24996 * 15 14 12 27 27 H 1.08994 * 109.52956 * 182.44119 * 15 14 12 28 28 H 1.08998 * 109.50366 * 177.59072 * 16 15 14 29 29 H 1.08998 * 109.49730 * 297.71512 * 16 15 14 30 30 H 1.08999 * 109.46128 * 60.84497 * 17 16 15 31 31 H 1.09008 * 109.45701 * 180.81936 * 17 16 15 32 32 H 1.00908 * 111.00038 * 302.33556 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5880 -1.6314 1.1332 6 6 1.7823 -0.1848 2.4803 7 7 1.2118 0.9945 2.5956 8 14 2.2541 -1.1477 4.0099 9 1 3.6392 -0.7927 4.4107 10 1 1.3184 -0.8132 5.1136 11 1 2.1797 -2.6026 3.7216 12 6 2.0400 -0.7212 -1.2492 13 1 1.6053 -1.7198 -1.2950 14 6 1.6347 0.0690 -2.4955 15 6 2.1643 -0.6457 -3.7418 16 6 3.6851 -0.7863 -3.6324 17 6 4.0309 -1.5518 -2.3531 18 7 3.5034 -0.8271 -1.1899 19 1 -0.3633 0.4235 0.9363 20 1 -0.3633 0.5993 -0.8349 21 1 -0.3634 -1.0226 -0.1015 22 1 2.9704 1.4235 0.0004 23 1 0.9246 1.4739 1.8028 24 1 0.5478 0.1341 -2.5475 25 1 2.0578 1.0722 -2.4439 26 1 1.7113 -1.6345 -3.8148 27 1 1.9152 -0.0636 -4.6290 28 1 4.0632 -1.3323 -4.4967 29 1 4.1405 0.2034 -3.5986 30 1 3.5867 -2.5463 -2.3937 31 1 5.1138 -1.6410 -2.2648 32 1 3.9289 0.0842 -1.1081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307153468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:28 Heat of formation + Delta-G solvation = -66.874844 kcal Electronic energy + Delta-G solvation = -13843.435655 eV Core-core repulsion = 11610.041776 eV Total energy + Delta-G solvation = -2233.393880 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.87117 -35.85212 -32.04163 -31.27795 -30.96528 -28.13248 -24.92544 -23.00075 -22.47209 -20.13163 -19.32153 -17.13612 -16.09470 -14.50919 -14.40476 -14.29368 -13.64750 -13.39301 -13.06997 -12.49351 -12.37886 -11.72133 -11.44955 -11.09082 -10.97439 -10.81991 -10.65172 -10.56632 -10.55077 -10.11381 -10.00008 -9.92410 -9.00689 -8.31221 -7.96296 -7.44800 -6.07625 -3.91996 3.52251 3.55486 3.71617 4.65280 4.83542 5.06507 5.20144 5.31598 5.47936 5.60381 5.78043 5.81683 5.89558 5.97446 6.05758 6.20343 6.35515 6.38181 6.42622 6.52195 6.71920 6.78782 6.82945 7.26768 7.53134 7.86387 8.04064 8.30135 8.65659 9.11336 9.18709 9.89571 11.27587 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048974 B = 0.011897 C = 0.010550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.589041 B = 2352.877607 C = 2653.333982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.239 3.761 3 O -0.578 6.578 4 C -0.614 4.614 5 H 0.058 0.942 6 C 0.030 3.970 7 N -0.907 5.907 8 Si 1.065 2.935 9 H -0.291 1.291 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.079 3.921 13 H 0.069 0.931 14 C -0.151 4.151 15 C -0.119 4.119 16 C -0.157 4.157 17 C 0.057 3.943 18 N -0.659 5.659 19 H 0.065 0.935 20 H 0.025 0.975 21 H 0.047 0.953 22 H 0.353 0.647 23 H 0.290 0.710 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -3.097 -9.673 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.200 3.800 3 O -0.383 6.383 4 C -0.652 4.652 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.545 5.545 8 Si 0.895 3.105 9 H -0.218 1.218 10 H -0.215 1.215 11 H -0.217 1.217 12 C -0.031 4.031 13 H 0.087 0.913 14 C -0.190 4.190 15 C -0.157 4.157 16 C -0.197 4.197 17 C -0.073 4.073 18 N -0.288 5.288 19 H 0.084 0.916 20 H 0.044 0.956 21 H 0.066 0.934 22 H 0.198 0.802 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.329 -3.465 -7.612 8.681 hybrid contribution 0.479 0.373 -2.507 2.580 sum 2.808 -3.092 -10.119 10.947 Atomic orbital electron populations 1.21737 0.96702 0.99416 1.00764 1.18975 0.90550 0.79354 0.91119 1.86395 1.24422 1.30438 1.96998 1.22282 1.39485 1.11872 0.91596 0.92411 1.25632 0.94813 0.96413 1.00900 1.70596 1.36662 1.11483 1.35760 0.83633 0.76219 0.75011 0.75662 1.21789 1.21455 1.21731 1.22184 0.87330 0.98919 0.94715 0.91296 1.22278 1.01122 1.00011 0.95604 1.21581 0.95511 1.00385 0.98176 1.22292 0.96659 1.00910 0.99791 1.22019 0.99442 0.97830 0.88047 1.60552 1.05842 1.23658 1.38718 0.91648 0.95617 0.93428 0.80195 0.89582 0.91974 0.91860 0.92516 0.92978 0.92454 0.92426 0.91623 0.91572 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.14 37.16 0.30 -2.73 16 2 C 0.24 5.75 0.45 -91.77 -0.04 5.71 16 3 O -0.58 -14.15 10.11 -35.23 -0.36 -14.51 16 4 C -0.61 -16.80 7.70 -34.44 -0.27 -17.07 16 5 H 0.06 1.63 7.60 -52.48 -0.40 1.24 16 6 C 0.03 0.85 5.16 -17.82 -0.09 0.75 16 7 N -0.91 -27.35 12.85 55.43 0.71 -26.64 16 8 Si 1.06 25.62 29.91 -169.99 -5.08 20.54 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.08 1.60 1.78 -67.73 -0.12 1.48 16 13 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 14 C -0.15 -2.65 4.91 -26.66 -0.13 -2.78 16 15 C -0.12 -1.74 6.00 -26.61 -0.16 -1.90 16 16 C -0.16 -2.14 6.08 -26.65 -0.16 -2.30 16 17 C 0.06 0.87 6.55 -3.83 -0.03 0.85 16 18 N -0.66 -12.42 5.82 -106.76 -0.62 -13.04 16 19 H 0.06 1.72 6.08 -51.93 -0.32 1.40 16 20 H 0.02 0.55 6.87 -51.93 -0.36 0.19 16 21 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.35 8.00 7.65 45.56 0.35 8.35 16 23 H 0.29 8.79 4.85 -40.82 -0.20 8.59 16 24 H 0.06 1.11 6.74 -51.93 -0.35 0.76 16 25 H 0.06 1.16 7.54 -51.93 -0.39 0.77 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 32 H 0.33 6.09 7.41 -39.29 -0.29 5.80 16 LS Contribution 246.66 15.07 3.72 3.72 Total: -1.00 -29.66 246.66 -6.46 -36.12 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.13 Total: 11.81 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -0.69 Total: -18.00 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.09 Total: -39.67 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.36 Total: -14.51 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.66 -6.46 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307153468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.760 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds