Wall clock time and date at job start Mon Mar 30 2020 02:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47634 * 2 1 4 4 C 1.50698 * 109.46823 * 120.00196 * 2 1 3 5 5 H 1.08008 * 120.00098 * 115.22159 * 4 2 1 6 6 C 1.37877 * 120.00270 * 295.22181 * 4 2 1 7 7 N 1.31514 * 119.99627 * 353.91022 * 6 4 2 8 8 Si 1.86797 * 120.00186 * 173.91279 * 6 4 2 9 9 H 1.48495 * 109.47309 * 89.99983 * 8 6 4 10 10 H 1.48505 * 109.46917 * 209.99849 * 8 6 4 11 11 H 1.48504 * 109.47120 * 329.99835 * 8 6 4 12 12 C 1.53001 * 109.47131 * 240.00021 * 2 1 3 13 13 H 1.09002 * 109.45954 * 305.00010 * 12 2 1 14 14 C 1.53034 * 109.46469 * 64.98315 * 12 2 1 15 15 C 1.53112 * 109.28255 * 179.19745 * 14 12 2 16 16 C 1.53125 * 109.16069 * 302.34475 * 15 14 12 17 17 C 1.53040 * 109.27363 * 57.65173 * 16 15 14 18 18 N 1.46842 * 109.46286 * 185.02705 * 12 2 1 19 19 H 1.08999 * 109.47040 * 294.33598 * 1 2 3 20 20 H 1.09006 * 109.46609 * 54.33035 * 1 2 3 21 21 H 1.08996 * 109.47447 * 174.33040 * 1 2 3 22 22 H 0.96696 * 114.00214 * 179.97438 * 3 2 1 23 23 H 0.97001 * 120.00134 * 3.20515 * 7 6 4 24 24 H 1.09007 * 109.49844 * 299.13850 * 14 12 2 25 25 H 1.08998 * 109.50639 * 59.24795 * 14 12 2 26 26 H 1.09005 * 109.52471 * 62.24996 * 15 14 12 27 27 H 1.08994 * 109.52956 * 182.44119 * 15 14 12 28 28 H 1.08998 * 109.50366 * 177.59072 * 16 15 14 29 29 H 1.08998 * 109.49730 * 297.71512 * 16 15 14 30 30 H 1.08999 * 109.46128 * 60.84497 * 17 16 15 31 31 H 1.09008 * 109.45701 * 180.81936 * 17 16 15 32 32 H 1.00908 * 111.00038 * 302.33556 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5880 -1.6314 1.1332 6 6 1.7823 -0.1848 2.4803 7 7 1.2118 0.9945 2.5956 8 14 2.2541 -1.1477 4.0099 9 1 3.6392 -0.7927 4.4107 10 1 1.3184 -0.8132 5.1136 11 1 2.1797 -2.6026 3.7216 12 6 2.0400 -0.7212 -1.2492 13 1 1.6053 -1.7198 -1.2950 14 6 1.6347 0.0690 -2.4955 15 6 2.1643 -0.6457 -3.7418 16 6 3.6851 -0.7863 -3.6324 17 6 4.0309 -1.5518 -2.3531 18 7 3.5034 -0.8271 -1.1899 19 1 -0.3633 0.4235 0.9363 20 1 -0.3633 0.5993 -0.8349 21 1 -0.3634 -1.0226 -0.1015 22 1 2.9704 1.4235 0.0004 23 1 0.9246 1.4739 1.8028 24 1 0.5478 0.1341 -2.5475 25 1 2.0578 1.0722 -2.4439 26 1 1.7113 -1.6345 -3.8148 27 1 1.9152 -0.0636 -4.6290 28 1 4.0632 -1.3323 -4.4967 29 1 4.1405 0.2034 -3.5986 30 1 3.5867 -2.5463 -2.3937 31 1 5.1138 -1.6410 -2.2648 32 1 3.9289 0.0842 -1.1081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307153468.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:28 Heat of formation + Delta-G solvation = -88.387187 kcal Electronic energy + Delta-G solvation = -13844.368500 eV Core-core repulsion = 11610.041776 eV Total energy + Delta-G solvation = -2234.326725 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.41834 -37.56202 -34.14155 -32.63016 -32.60884 -29.80538 -26.98473 -24.47630 -23.96067 -21.58160 -21.00405 -19.18825 -17.79305 -16.00616 -15.92223 -15.70130 -15.48011 -14.94711 -14.55255 -14.22907 -14.16163 -13.25285 -13.00118 -12.98146 -12.69371 -12.47437 -12.38755 -12.05777 -12.01367 -11.89287 -11.71551 -11.47401 -10.77677 -10.44969 -9.91315 -8.95306 -8.28852 -6.14754 1.57085 1.64738 1.82347 2.66329 3.30465 3.49651 3.83251 3.89782 4.02315 4.11403 4.30350 4.44635 4.51087 4.61643 4.74468 4.83224 4.91138 4.97723 5.06999 5.08319 5.13103 5.23339 5.31890 5.42094 5.71468 6.15846 6.40499 6.44337 6.62671 6.88891 7.26195 7.74605 9.03975 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048974 B = 0.011897 C = 0.010550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.589041 B = 2352.877607 C = 2653.333982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.229 3.771 3 O -0.585 6.585 4 C -0.614 4.614 5 H 0.045 0.955 6 C -0.018 4.018 7 N -0.936 5.936 8 Si 1.108 2.892 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.090 3.910 13 H 0.055 0.945 14 C -0.143 4.143 15 C -0.115 4.115 16 C -0.149 4.149 17 C 0.056 3.944 18 N -0.678 5.678 19 H 0.034 0.966 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.358 0.642 23 H 0.279 0.721 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -3.895 -11.006 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.190 3.810 3 O -0.391 6.391 4 C -0.652 4.652 5 H 0.063 0.937 6 C -0.220 4.220 7 N -0.575 5.575 8 Si 0.933 3.067 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.203 1.203 12 C -0.020 4.020 13 H 0.074 0.926 14 C -0.183 4.183 15 C -0.153 4.153 16 C -0.188 4.188 17 C -0.074 4.074 18 N -0.307 5.307 19 H 0.053 0.947 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.204 0.796 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.208 -4.274 -8.969 10.441 hybrid contribution 0.224 0.603 -2.134 2.229 sum 3.432 -3.671 -11.103 12.187 Atomic orbital electron populations 1.21667 0.96766 0.99980 0.99776 1.19045 0.90654 0.79260 0.92002 1.86366 1.24969 1.30633 1.97103 1.22539 1.38399 1.11263 0.93021 0.93659 1.26831 0.94516 0.96547 1.04081 1.70705 1.38883 1.12709 1.35212 0.83052 0.76307 0.74577 0.72805 1.20681 1.21677 1.20335 1.21838 0.88379 0.97789 0.94042 0.92633 1.22158 1.00790 0.99430 0.95897 1.21564 0.96188 1.00429 0.97073 1.22212 0.95850 1.01099 0.99676 1.22098 1.00223 0.97340 0.87699 1.60477 1.04939 1.24029 1.41305 0.94723 0.93847 0.92590 0.79608 0.90819 0.92557 0.92708 0.92133 0.91077 0.89794 0.92206 0.91935 0.89928 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.14 71.98 0.59 -5.31 16 2 C 0.23 11.04 0.45 -11.54 -0.01 11.03 16 3 O -0.59 -28.82 10.11 -148.98 -1.51 -30.32 16 4 C -0.61 -33.67 7.70 25.60 0.20 -33.47 16 5 H 0.05 2.56 7.60 -2.91 -0.02 2.53 16 6 C -0.02 -1.04 5.16 84.65 0.44 -0.60 16 7 N -0.94 -57.21 12.85 21.45 0.28 -56.93 16 8 Si 1.11 51.62 29.91 68.60 2.05 53.67 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 C 0.09 3.57 1.78 44.94 0.08 3.65 16 13 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.14 -4.80 4.91 30.64 0.15 -4.65 16 15 C -0.11 -3.01 6.00 30.67 0.18 -2.83 16 16 C -0.15 -3.54 6.08 30.65 0.19 -3.36 16 17 C 0.06 1.57 6.55 86.33 0.57 2.13 16 18 N -0.68 -24.68 5.82 -491.68 -2.86 -27.54 16 19 H 0.03 1.84 6.08 -2.39 -0.01 1.82 16 20 H 0.04 1.86 6.87 -2.38 -0.02 1.84 16 21 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.36 16.33 7.65 -74.06 -0.57 15.76 16 23 H 0.28 17.27 4.85 -92.71 -0.45 16.82 16 24 H 0.06 1.92 6.74 -2.38 -0.02 1.91 16 25 H 0.05 1.92 7.54 -2.39 -0.02 1.91 16 26 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.33 11.85 7.41 -89.69 -0.66 11.19 16 Total: -1.00 -62.76 246.66 0.54 -62.22 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.20 Total: 32.31 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 2.38 Total: -33.40 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.59 Total: -84.47 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.51 Total: -30.32 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.67 kcal Total: -62.76 0.54 -62.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307153468.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.162 kcal (2) G-P(sol) polarization free energy of solvation -62.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds