Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.99256 * 2 1 4 4 O 1.43746 * 109.88230 * 238.90969 * 2 1 3 5 5 C 1.44381 * 106.97314 * 267.09198 * 4 2 1 6 6 C 1.54993 * 103.49106 * 319.93370 * 5 4 2 7 7 C 1.54105 * 109.87758 * 121.07844 * 2 1 3 8 8 H 1.09000 * 110.59965 * 358.66140 * 7 2 1 9 9 N 1.46898 * 110.48926 * 236.06842 * 7 2 1 10 10 C 1.46898 * 111.00203 * 168.46281 * 9 7 2 11 11 C 1.50701 * 109.47554 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99863 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00103 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99921 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99929 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47087 * 60.00019 * 15 13 11 17 17 H 1.48501 * 109.47228 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47229 * 300.00605 * 15 13 11 19 19 H 1.09001 * 109.47430 * 298.92129 * 1 2 3 20 20 H 1.09000 * 109.47262 * 58.91934 * 1 2 3 21 21 H 1.09004 * 109.47244 * 178.92209 * 1 2 3 22 22 H 1.09004 * 109.47056 * 175.19643 * 3 2 1 23 23 H 1.09003 * 109.46559 * 295.19320 * 3 2 1 24 24 H 1.08995 * 109.47119 * 55.19222 * 3 2 1 25 25 H 1.08998 * 110.61124 * 201.43400 * 5 4 2 26 26 H 1.09001 * 110.61947 * 78.43944 * 5 4 2 27 27 H 1.08991 * 110.90769 * 278.82678 * 6 5 4 28 28 H 1.09005 * 110.90338 * 155.22183 * 6 5 4 29 29 H 1.00901 * 111.00038 * 44.51848 * 9 7 2 30 30 H 1.09002 * 109.47444 * 300.00726 * 10 9 7 31 31 H 1.09003 * 109.46629 * 60.00304 * 10 9 7 32 32 H 0.96999 * 119.99433 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0530 1.4379 0.0000 4 8 2.0188 -0.6980 -1.1576 5 6 2.2280 -2.0715 -0.7644 6 6 2.8324 -1.9524 0.6578 7 6 2.0539 -0.7481 1.2412 8 1 1.2250 -1.0929 1.8594 9 7 2.9511 0.1149 2.0210 10 6 3.2397 -0.4759 3.3346 11 6 4.1612 0.4352 4.1039 12 1 4.4985 1.3609 3.6613 13 6 4.5738 0.0871 5.3726 14 7 4.1636 -1.0404 5.9112 15 14 5.7155 1.2168 6.3263 16 1 5.0635 2.5382 6.5110 17 1 6.0084 0.6188 7.6537 18 1 6.9828 1.3913 5.5720 19 1 -0.3634 0.4970 0.8995 20 1 -0.3634 0.5305 -0.8801 21 1 -0.3634 -1.0275 -0.0193 22 1 3.1396 1.4292 0.0861 23 1 1.7661 1.9288 -0.9300 24 1 1.6260 1.9798 0.8437 25 1 2.9294 -2.5613 -1.4398 26 1 1.2813 -2.6109 -0.7353 27 1 3.9002 -1.7391 0.6101 28 1 2.6431 -2.8557 1.2377 29 1 2.5661 1.0425 2.1186 30 1 2.3093 -0.6037 3.8880 31 1 3.7181 -1.4460 3.1994 32 1 4.4542 -1.2854 6.8036 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307244568.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = -71.237701 kcal Electronic energy + Delta-G solvation = -13269.309318 eV Core-core repulsion = 11035.726251 eV Total energy + Delta-G solvation = -2233.583067 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.99841 -36.75635 -34.69894 -33.48885 -31.66760 -28.81440 -27.88602 -25.86816 -23.99546 -22.12465 -20.58421 -18.62375 -17.32620 -16.82417 -16.66763 -16.45934 -15.61482 -14.95145 -14.47989 -14.19434 -14.03665 -13.38456 -13.26541 -13.14179 -12.76438 -12.70544 -12.58217 -12.55093 -12.11534 -12.01036 -11.85353 -11.47330 -11.20571 -10.67507 -10.55785 -9.15201 -8.23453 -6.34583 1.40622 1.44071 1.52063 2.39141 2.89824 3.09938 3.42881 3.62406 3.90054 4.05399 4.20856 4.29643 4.40294 4.58579 4.65262 4.76164 4.85417 4.91405 4.97808 5.02332 5.08420 5.20721 5.23708 5.27106 5.45912 5.61542 6.00784 6.03883 6.42751 6.70711 6.87594 7.36350 8.87912 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056561 B = 0.008197 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.919909 B = 3415.089982 C = 3599.735791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 C -0.138 4.138 4 O -0.382 6.382 5 C 0.054 3.946 6 C -0.147 4.147 7 C 0.054 3.946 8 H 0.038 0.962 9 N -0.675 5.675 10 C 0.210 3.790 11 C -0.537 4.537 12 H 0.064 0.936 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.972 3.028 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.269 1.269 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.339 0.661 30 H -0.042 1.042 31 H 0.001 0.999 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 1.106 -10.849 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 C -0.196 4.196 4 O -0.302 6.302 5 C -0.022 4.022 6 C -0.185 4.185 7 C -0.057 4.057 8 H 0.056 0.944 9 N -0.308 5.308 10 C 0.082 3.918 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.797 3.203 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.194 1.194 19 H 0.087 0.913 20 H 0.095 0.905 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.159 0.841 30 H -0.024 1.024 31 H 0.019 0.981 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.447 0.853 -11.188 12.473 hybrid contribution -0.251 0.111 1.574 1.597 sum -5.699 0.964 -9.614 11.218 Atomic orbital electron populations 1.22211 0.93316 1.02826 1.03122 1.22206 0.94140 0.93613 0.83929 1.21779 1.02230 0.93269 1.02292 1.88832 1.86410 1.21596 1.33314 1.23588 1.00506 0.83821 0.94331 1.23152 1.00783 0.97468 0.97086 1.22964 0.93673 0.94313 0.94738 0.94423 1.60852 1.46582 1.05242 1.18168 1.19203 0.93165 0.94704 0.84697 1.21516 1.29180 1.06687 1.00125 0.91737 1.25946 0.98120 0.96965 0.98621 1.70084 1.46323 1.24346 1.16582 0.85393 0.78959 0.78740 0.77245 1.19010 1.20769 1.19441 0.91339 0.90522 0.92007 0.92105 0.91050 0.90880 0.87347 0.90733 0.91552 0.90931 0.84108 1.02400 0.98070 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 8.62 71.98 0.62 -3.22 16 2 C 0.10 3.04 1.19 -10.42 -0.01 3.03 16 3 C -0.14 -4.00 7.62 71.98 0.55 -3.45 16 4 O -0.38 -11.84 10.86 -148.98 -1.62 -13.45 16 5 C 0.05 1.45 7.66 72.66 0.56 2.01 16 6 C -0.15 -4.98 6.31 31.89 0.20 -4.78 16 7 C 0.05 1.96 2.95 45.91 0.14 2.10 16 8 H 0.04 1.42 7.59 -2.39 -0.02 1.40 16 9 N -0.68 -29.34 5.22 -490.45 -2.56 -31.90 16 10 C 0.21 11.34 5.28 85.56 0.45 11.79 16 11 C -0.54 -30.79 9.32 25.60 0.24 -30.55 16 12 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 13 C 0.00 0.10 5.46 84.66 0.46 0.57 16 14 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 15 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.06 1.43 8.11 -2.38 -0.02 1.41 16 22 H 0.06 2.02 7.45 -2.38 -0.02 2.00 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.07 1.97 7.14 -2.39 -0.02 1.95 16 25 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.07 1.70 8.11 -2.39 -0.02 1.68 16 27 H 0.07 2.54 8.06 -2.39 -0.02 2.52 16 28 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.34 13.83 6.34 -89.69 -0.57 13.26 16 30 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 31 H 0.00 0.07 7.74 -2.39 -0.02 0.05 16 32 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -64.00 260.12 1.85 -62.15 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.51 Total: 15.59 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.20 Total: -22.52 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.27 Total: -88.16 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.62 Total: -13.45 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.00 1.85 -62.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307244568.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.089 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds