Wall clock time and date at job start Mon Mar 30 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.99113 * 2 1 4 4 O 1.44057 * 109.92320 * 238.75318 * 2 1 3 5 5 C 1.44377 * 106.97960 * 214.01992 * 4 2 1 6 6 C 1.54987 * 103.49050 * 40.14276 * 5 4 2 7 7 C 1.54103 * 109.88076 * 121.09139 * 2 1 3 8 8 H 1.09006 * 110.47896 * 240.25907 * 7 2 1 9 9 N 1.46895 * 110.48712 * 2.77513 * 7 2 1 10 10 C 1.46904 * 110.99508 * 203.15913 * 9 7 2 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 7 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 H 1.09001 * 109.46897 * 298.91015 * 1 2 3 20 20 H 1.08997 * 109.47700 * 58.91578 * 1 2 3 21 21 H 1.09006 * 109.47296 * 178.91353 * 1 2 3 22 22 H 1.09007 * 109.47461 * 181.08752 * 3 2 1 23 23 H 1.09004 * 109.47290 * 301.08849 * 3 2 1 24 24 H 1.09003 * 109.47163 * 61.09327 * 3 2 1 25 25 H 1.09003 * 110.61794 * 281.63831 * 5 4 2 26 26 H 1.09001 * 110.61314 * 158.64652 * 5 4 2 27 27 H 1.09004 * 110.90999 * 204.77381 * 6 5 4 28 28 H 1.09002 * 110.93863 * 81.18517 * 6 5 4 29 29 H 1.00890 * 111.00188 * 79.20324 * 9 7 2 30 30 H 1.09003 * 109.47066 * 60.00292 * 10 9 7 31 31 H 1.08996 * 109.47319 * 299.99765 * 10 9 7 32 32 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4377 0.0000 4 8 2.0208 -0.7025 -1.1579 5 6 3.2405 -1.3663 -0.7626 6 6 2.9216 -1.8914 0.6603 7 6 2.0540 -0.7484 1.2410 8 1 2.6601 -0.0853 1.8585 9 7 0.9363 -1.2965 2.0209 10 6 1.3275 -1.5140 3.4201 11 6 0.1583 -2.0761 4.1870 12 1 -0.7815 -2.2535 3.6852 13 6 0.2880 -2.3628 5.5293 14 7 1.4323 -2.1463 6.1404 15 14 -1.1611 -3.0602 6.4797 16 1 -1.9616 -1.9466 7.0492 17 1 -0.6621 -3.9241 7.5797 18 1 -2.0116 -3.8643 5.5658 19 1 -0.3633 0.4968 0.8996 20 1 -0.3634 0.5305 -0.8800 21 1 -0.3634 -1.0275 -0.0195 22 1 3.1429 1.4280 -0.0195 23 1 1.6785 1.9606 -0.8801 24 1 1.7104 1.9490 0.8996 25 1 4.0701 -0.6599 -0.7341 26 1 3.4627 -2.1939 -1.4364 27 1 3.8349 -2.0202 1.2412 28 1 2.3575 -2.8230 0.6144 29 1 0.5891 -2.1480 1.6059 30 1 1.6317 -0.5660 3.8639 31 1 2.1593 -2.2172 3.4597 32 1 2.1848 -1.7845 5.6468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307244569.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:14 Heat of formation + Delta-G solvation = -57.142602 kcal Electronic energy + Delta-G solvation = -13294.070405 eV Core-core repulsion = 11061.098547 eV Total energy + Delta-G solvation = -2232.971858 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.73223 -35.18938 -32.93667 -32.20592 -30.06203 -27.15136 -26.00889 -24.13880 -22.08636 -21.33530 -19.40269 -17.08603 -15.93973 -15.66570 -14.74645 -14.13765 -13.74224 -13.66327 -13.34038 -12.93679 -12.40781 -12.03304 -11.94068 -11.63729 -11.38453 -11.30305 -10.89119 -10.68455 -10.64349 -10.55788 -10.24712 -10.09477 -9.45975 -8.65484 -8.43756 -7.43987 -6.40769 -4.09909 3.43201 3.46431 3.62400 4.07038 4.49767 4.74948 4.96955 5.09289 5.25950 5.32990 5.37060 5.47256 5.60089 5.69576 5.81965 5.91309 6.02045 6.16280 6.18137 6.25569 6.28021 6.45308 6.81902 6.89531 7.11255 7.21847 7.73228 8.09951 8.39804 8.54503 8.83703 9.61922 10.99098 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056391 B = 0.008182 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.412505 B = 3421.222312 C = 3567.336288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.100 3.900 3 C -0.157 4.157 4 O -0.375 6.375 5 C 0.050 3.950 6 C -0.185 4.185 7 C 0.064 3.936 8 H 0.083 0.917 9 N -0.667 5.667 10 C 0.183 3.817 11 C -0.595 4.595 12 H 0.057 0.943 13 C 0.014 3.986 14 N -0.914 5.914 15 Si 1.076 2.924 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.288 1.288 19 H 0.079 0.921 20 H 0.041 0.959 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.335 0.665 30 H 0.017 0.983 31 H -0.024 1.024 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 2.956 -11.275 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 C -0.215 4.215 4 O -0.295 6.295 5 C -0.028 4.028 6 C -0.224 4.224 7 C -0.049 4.049 8 H 0.101 0.899 9 N -0.296 5.296 10 C 0.056 3.944 11 C -0.634 4.634 12 H 0.075 0.925 13 C -0.189 4.189 14 N -0.550 5.550 15 Si 0.904 3.096 16 H -0.214 1.214 17 H -0.211 1.211 18 H -0.214 1.214 19 H 0.098 0.902 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.035 0.965 31 H -0.006 1.006 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.292 3.050 -9.829 10.372 hybrid contribution 1.386 -0.252 -1.369 1.964 sum 2.678 2.798 -11.198 11.849 Atomic orbital electron populations 1.21549 0.91978 1.02667 1.01193 1.22257 0.95889 0.91167 0.84610 1.22182 1.00764 0.96215 1.02334 1.88923 1.39170 1.67328 1.34044 1.23374 0.88018 0.95985 0.95374 1.23878 1.01577 1.00165 0.96821 1.22961 0.91950 0.95417 0.94524 0.89910 1.60676 1.30703 1.34376 1.03878 1.19696 0.95740 0.94932 0.83990 1.22022 0.98598 1.46055 0.96711 0.92507 1.25869 1.01984 0.95656 0.95424 1.70771 1.02485 1.42125 1.39647 0.83443 0.74207 0.76477 0.75464 1.21389 1.21079 1.21435 0.90170 0.93971 0.92102 0.92958 0.92262 0.91341 0.92706 0.89591 0.90709 0.90536 0.84708 0.96473 1.00603 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 7.89 37.16 0.29 -1.59 16 2 C 0.10 1.61 1.20 -90.05 -0.11 1.51 16 3 C -0.16 -2.20 8.62 37.15 0.32 -1.88 16 4 O -0.38 -6.08 10.88 -35.23 -0.38 -6.46 16 5 C 0.05 0.69 7.67 38.21 0.29 0.98 16 6 C -0.18 -2.91 6.81 -24.73 -0.17 -3.08 16 7 C 0.06 1.13 2.95 -66.19 -0.20 0.93 16 8 H 0.08 1.52 7.40 -51.93 -0.38 1.14 16 9 N -0.67 -14.10 4.51 -106.37 -0.48 -14.58 16 10 C 0.18 4.71 4.61 -4.97 -0.02 4.69 16 11 C -0.60 -16.94 9.32 -34.44 -0.32 -17.26 16 12 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 13 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 14 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 15 Si 1.08 25.40 29.90 -169.99 -5.08 20.32 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H 0.08 1.37 7.89 -51.93 -0.41 0.96 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 1.02 7.45 -51.93 -0.39 0.64 16 22 H 0.05 0.68 8.12 -51.92 -0.42 0.26 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.25 7.60 -51.93 -0.39 0.86 16 29 H 0.33 7.00 7.68 -39.30 -0.30 6.70 16 30 H 0.02 0.47 7.94 -51.93 -0.41 0.06 16 31 H -0.02 -0.64 8.01 -51.93 -0.42 -1.05 16 32 H 0.27 8.12 7.22 -40.82 -0.29 7.82 16 LS Contribution 260.73 15.07 3.93 3.93 Total: -1.00 -30.20 260.73 -6.43 -36.63 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.16 Total: 2.70 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.01 Total: -15.38 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.28 Total: -41.74 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.38 Total: -6.46 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.20 -6.43 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307244569.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds