Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.99113 * 2 1 4 4 O 1.44057 * 109.92320 * 238.75318 * 2 1 3 5 5 C 1.44377 * 106.97960 * 214.01992 * 4 2 1 6 6 C 1.54987 * 103.49050 * 40.14276 * 5 4 2 7 7 C 1.54103 * 109.88076 * 121.09139 * 2 1 3 8 8 H 1.09006 * 110.47896 * 240.25907 * 7 2 1 9 9 N 1.46895 * 110.48712 * 2.77513 * 7 2 1 10 10 C 1.46904 * 110.99508 * 203.15913 * 9 7 2 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 7 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 H 1.09001 * 109.46897 * 298.91015 * 1 2 3 20 20 H 1.08997 * 109.47700 * 58.91578 * 1 2 3 21 21 H 1.09006 * 109.47296 * 178.91353 * 1 2 3 22 22 H 1.09007 * 109.47461 * 181.08752 * 3 2 1 23 23 H 1.09004 * 109.47290 * 301.08849 * 3 2 1 24 24 H 1.09003 * 109.47163 * 61.09327 * 3 2 1 25 25 H 1.09003 * 110.61794 * 281.63831 * 5 4 2 26 26 H 1.09001 * 110.61314 * 158.64652 * 5 4 2 27 27 H 1.09004 * 110.90999 * 204.77381 * 6 5 4 28 28 H 1.09002 * 110.93863 * 81.18517 * 6 5 4 29 29 H 1.00890 * 111.00188 * 79.20324 * 9 7 2 30 30 H 1.09003 * 109.47066 * 60.00292 * 10 9 7 31 31 H 1.08996 * 109.47319 * 299.99765 * 10 9 7 32 32 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4377 0.0000 4 8 2.0208 -0.7025 -1.1579 5 6 3.2405 -1.3663 -0.7626 6 6 2.9216 -1.8914 0.6603 7 6 2.0540 -0.7484 1.2410 8 1 2.6601 -0.0853 1.8585 9 7 0.9363 -1.2965 2.0209 10 6 1.3275 -1.5140 3.4201 11 6 0.1583 -2.0761 4.1870 12 1 -0.7815 -2.2535 3.6852 13 6 0.2880 -2.3628 5.5293 14 7 1.4323 -2.1463 6.1404 15 14 -1.1611 -3.0602 6.4797 16 1 -1.9616 -1.9466 7.0492 17 1 -0.6621 -3.9241 7.5797 18 1 -2.0116 -3.8643 5.5658 19 1 -0.3633 0.4968 0.8996 20 1 -0.3634 0.5305 -0.8800 21 1 -0.3634 -1.0275 -0.0195 22 1 3.1429 1.4280 -0.0195 23 1 1.6785 1.9606 -0.8801 24 1 1.7104 1.9490 0.8996 25 1 4.0701 -0.6599 -0.7341 26 1 3.4627 -2.1939 -1.4364 27 1 3.8349 -2.0202 1.2412 28 1 2.3575 -2.8230 0.6144 29 1 0.5891 -2.1480 1.6059 30 1 1.6317 -0.5660 3.8639 31 1 2.1593 -2.2172 3.4597 32 1 2.1848 -1.7845 5.6468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307244569.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = -77.561202 kcal Electronic energy + Delta-G solvation = -13294.955822 eV Core-core repulsion = 11061.098547 eV Total energy + Delta-G solvation = -2233.857275 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04219 -36.95570 -34.83148 -33.56190 -31.60032 -28.55216 -27.69404 -25.72352 -24.02870 -22.70240 -20.77190 -19.10868 -17.34247 -17.02741 -16.19963 -15.80848 -15.58940 -15.18493 -14.81874 -14.23262 -14.11557 -13.74881 -13.24087 -13.12692 -12.96488 -12.62062 -12.54788 -12.52571 -12.11946 -11.92378 -11.86412 -11.64076 -10.81840 -10.62800 -10.60404 -9.21320 -8.72205 -6.43108 1.53187 1.62024 1.80265 2.54349 2.85711 3.12273 3.23702 3.65281 3.82595 4.01579 4.06432 4.21893 4.26763 4.52196 4.59272 4.73849 4.78867 4.80331 4.92427 4.93213 4.96513 4.99891 5.06271 5.25426 5.49432 5.70982 5.97137 6.00865 6.36966 6.51163 6.62732 7.38614 8.67755 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056391 B = 0.008182 C = 0.007847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.412505 B = 3421.222312 C = 3567.336288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.103 3.897 3 C -0.154 4.154 4 O -0.385 6.385 5 C 0.054 3.946 6 C -0.183 4.183 7 C 0.055 3.945 8 H 0.074 0.926 9 N -0.663 5.663 10 C 0.197 3.803 11 C -0.610 4.610 12 H 0.056 0.944 13 C -0.037 4.037 14 N -0.937 5.937 15 Si 1.125 2.875 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.269 1.269 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.336 0.664 30 H -0.005 1.005 31 H -0.042 1.042 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 2.974 -12.345 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 C -0.211 4.211 4 O -0.305 6.305 5 C -0.023 4.023 6 C -0.223 4.223 7 C -0.056 4.056 8 H 0.092 0.908 9 N -0.293 5.293 10 C 0.069 3.931 11 C -0.648 4.648 12 H 0.074 0.926 13 C -0.234 4.234 14 N -0.574 5.574 15 Si 0.945 3.055 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.194 1.194 19 H 0.084 0.916 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.127 0.873 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.013 0.987 31 H -0.025 1.025 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.920 3.083 -10.939 11.402 hybrid contribution 1.552 -0.243 -1.100 1.918 sum 2.472 2.839 -12.039 12.613 Atomic orbital electron populations 1.21501 0.92280 1.02020 1.01383 1.22215 0.95777 0.92082 0.83581 1.22146 1.01469 0.94656 1.02859 1.88908 1.40230 1.67585 1.33763 1.23532 0.87651 0.96969 0.94117 1.23820 1.01131 0.98941 0.98400 1.23080 0.91352 0.96236 0.94936 0.90818 1.60572 1.32355 1.34257 1.02089 1.19360 0.94306 0.92949 0.86437 1.22387 0.99222 1.45874 0.97330 0.92617 1.27439 1.03683 0.95316 0.96975 1.70903 1.03037 1.43688 1.39785 0.82835 0.71464 0.76517 0.74639 1.19863 1.20804 1.19368 0.91565 0.92084 0.93235 0.91898 0.90770 0.91741 0.90802 0.87261 0.90361 0.91377 0.84568 0.98687 1.02452 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.57 7.89 71.98 0.57 -3.00 16 2 C 0.10 3.16 1.20 -10.42 -0.01 3.15 16 3 C -0.15 -3.99 8.62 71.98 0.62 -3.37 16 4 O -0.39 -11.54 10.88 -148.98 -1.62 -13.16 16 5 C 0.05 1.34 7.67 72.66 0.56 1.90 16 6 C -0.18 -5.58 6.81 31.89 0.22 -5.37 16 7 C 0.06 1.95 2.95 45.91 0.14 2.08 16 8 H 0.07 2.72 7.40 -2.38 -0.02 2.70 16 9 N -0.66 -28.31 4.51 -490.45 -2.21 -30.52 16 10 C 0.20 10.40 4.61 85.56 0.39 10.80 16 11 C -0.61 -35.03 9.32 25.60 0.24 -34.79 16 12 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 13 C -0.04 -2.12 5.46 84.65 0.46 -1.66 16 14 N -0.94 -58.01 13.65 21.45 0.29 -57.72 16 15 Si 1.12 50.44 29.90 68.60 2.05 52.49 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H 0.07 2.24 7.89 -2.39 -0.02 2.22 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.05 1.63 7.45 -2.38 -0.02 1.61 16 22 H 0.06 1.49 8.12 -2.38 -0.02 1.47 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 26 H 0.11 2.24 8.14 -2.39 -0.02 2.23 16 27 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 29 H 0.34 14.15 7.68 -89.70 -0.69 13.46 16 30 H 0.00 -0.28 7.94 -2.39 -0.02 -0.30 16 31 H -0.04 -2.34 8.01 -2.39 -0.02 -2.36 16 32 H 0.25 15.92 7.22 -92.71 -0.67 15.25 16 Total: -1.00 -64.00 260.73 2.18 -61.81 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.49 Total: 17.36 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 3.18 Total: -30.26 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.92 Total: -88.24 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.62 Total: -13.16 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -64.00 2.18 -61.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307244569.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.748 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds