Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00292 * 2 1 4 4 H 1.48502 * 109.47077 * 270.00162 * 3 2 1 5 5 H 1.48499 * 109.47105 * 29.99674 * 3 2 1 6 6 H 1.48499 * 109.47278 * 149.99728 * 3 2 1 7 7 C 1.37882 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00315 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99806 * 179.97438 * 7 2 1 10 10 N 1.46892 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00363 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47263 * 325.00495 * 11 10 9 13 13 C 1.53006 * 109.46626 * 85.00189 * 11 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47592 * 300.00035 * 14 13 11 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 14 13 17 17 H 1.08996 * 109.47134 * 59.99508 * 16 15 14 18 18 O 1.42898 * 109.47379 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47489 * 205.00162 * 11 10 9 20 20 H 0.97000 * 119.99891 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47305 * 59.99968 * 9 7 2 22 22 H 1.09001 * 109.47142 * 300.00403 * 9 7 2 23 23 H 1.00903 * 111.00135 * 303.95790 * 10 9 7 24 24 H 1.08993 * 109.46955 * 300.00347 * 13 11 10 25 25 H 1.09000 * 109.47050 * 60.00176 * 13 11 10 26 26 H 1.09000 * 109.47160 * 60.00369 * 14 13 11 27 27 H 1.09002 * 109.46719 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47140 * 300.00346 * 15 14 13 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 30 30 H 0.96699 * 113.99486 * 299.99672 * 18 16 15 31 31 H 1.09000 * 109.47140 * 300.00408 * 19 11 10 32 32 H 1.09001 * 109.47230 * 59.99552 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 5.4696 -2.6184 -0.0011 12 1 5.8549 -1.7868 -0.5911 13 6 5.9838 -2.5058 1.4356 14 6 7.5133 -2.5474 1.4344 15 6 7.9872 -3.8683 0.8251 16 6 7.4730 -3.9809 -0.6115 17 1 7.8585 -3.1495 -1.2016 18 8 7.9152 -5.2149 -1.1805 19 6 5.9441 -3.9391 -0.6106 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6798 0.8894 22 1 3.8745 -0.6809 -0.8905 23 1 3.6259 -3.0953 0.7817 24 1 5.6458 -1.5650 1.8698 25 1 5.5986 -3.3375 2.0255 26 1 7.8989 -1.7160 0.8443 27 1 7.8796 -2.4677 2.4579 28 1 7.6016 -4.6997 1.4152 29 1 9.0768 -3.8981 0.8247 30 1 8.8768 -5.3105 -1.2133 31 1 5.5588 -4.7707 -0.0206 32 1 5.5776 -4.0193 -1.6341 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307326606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = -71.749934 kcal Electronic energy + Delta-G solvation = -12980.072404 eV Core-core repulsion = 10746.467125 eV Total energy + Delta-G solvation = -2233.605279 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.06692 -36.24161 -33.99951 -32.25765 -29.99276 -28.88854 -26.13837 -22.25396 -21.99073 -20.92220 -19.79588 -17.33849 -16.59955 -15.43493 -14.86645 -14.48410 -14.26394 -13.93930 -13.20668 -13.05241 -12.71082 -12.41427 -12.19200 -11.85470 -11.39646 -10.99145 -10.87520 -10.70255 -10.59173 -10.37645 -10.15205 -9.80032 -9.72834 -9.29230 -8.59109 -7.43806 -6.05808 -4.03647 3.28244 3.35269 3.37093 4.13830 4.41601 4.73410 4.76416 5.01870 5.25669 5.25919 5.28815 5.41376 5.52096 5.60348 5.66524 5.74630 5.98455 6.08945 6.14208 6.25069 6.29919 6.56128 6.56954 6.79624 7.04321 7.60364 7.63353 7.91240 8.34722 8.65617 9.02735 9.56070 11.07581 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058266 B = 0.007679 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.438909 B = 3645.416522 C = 3852.228084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.675 5.675 11 C 0.089 3.911 12 H 0.070 0.930 13 C -0.153 4.153 14 C -0.113 4.113 15 C -0.149 4.149 16 C 0.104 3.896 17 H 0.053 0.947 18 O -0.568 6.568 19 C -0.098 4.098 20 H 0.264 0.736 21 H -0.015 1.015 22 H 0.021 0.979 23 H 0.337 0.663 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.372 0.628 31 H 0.066 0.934 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.999 -5.046 1.884 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.304 5.304 11 C -0.022 4.022 12 H 0.089 0.911 13 C -0.192 4.192 14 C -0.151 4.151 15 C -0.187 4.187 16 C 0.045 3.955 17 H 0.071 0.929 18 O -0.373 6.373 19 C -0.137 4.137 20 H 0.073 0.927 21 H 0.003 0.997 22 H 0.039 0.961 23 H 0.155 0.845 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.218 0.782 31 H 0.085 0.915 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.101 -5.075 1.137 16.920 hybrid contribution 1.182 1.380 1.027 2.087 sum 17.283 -3.695 2.163 17.805 Atomic orbital electron populations 1.69903 1.06158 1.26861 1.51011 1.24912 0.94752 0.98941 0.94759 0.86823 0.80234 0.83869 0.78590 1.20147 1.21204 1.19279 1.21081 0.89012 0.94829 1.50544 0.90282 1.20019 0.96564 0.85034 0.94679 1.60484 1.03726 1.16699 1.49505 1.21470 0.90333 0.96567 0.93855 0.91129 1.22368 0.95278 1.02335 0.99212 1.21415 0.96301 0.96884 1.00509 1.22262 1.00037 0.98888 0.97498 1.21846 0.96040 0.85624 0.91957 0.92947 1.86549 1.26661 1.39559 1.84538 1.21431 0.91414 0.98175 1.02647 0.92652 0.99736 0.96105 0.84525 0.91632 0.91788 0.92021 0.92053 0.91226 0.92265 0.78186 0.91496 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.95 9.87 -34.44 -0.34 -15.29 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.16 4.03 4.31 -4.98 -0.02 4.01 16 10 N -0.68 -14.11 6.24 -108.00 -0.67 -14.78 16 11 C 0.09 1.49 2.47 -67.71 -0.17 1.32 16 12 H 0.07 1.22 7.80 -51.93 -0.40 0.81 16 13 C -0.15 -2.22 5.17 -26.73 -0.14 -2.36 16 14 C -0.11 -1.32 5.92 -26.73 -0.16 -1.47 16 15 C -0.15 -1.61 5.54 -26.73 -0.15 -1.76 16 16 C 0.10 1.30 3.47 -26.76 -0.09 1.21 16 17 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 18 O -0.57 -6.93 13.32 -35.23 -0.47 -7.40 16 19 C -0.10 -1.50 5.18 -26.76 -0.14 -1.64 16 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 21 H -0.01 -0.36 6.49 -51.93 -0.34 -0.70 16 22 H 0.02 0.52 7.48 -51.93 -0.39 0.13 16 23 H 0.34 6.85 8.47 -39.29 -0.33 6.52 16 24 H 0.06 1.04 7.45 -51.93 -0.39 0.66 16 25 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.37 2.75 9.08 45.56 0.41 3.16 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 257.40 15.07 3.88 3.88 Total: -1.00 -31.51 257.40 -6.87 -38.38 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.41 Total: 4.12 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.30 Total: -14.09 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.10 Total: -41.93 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.47 Total: -7.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.51 -6.87 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307326606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.372 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds