Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00292 * 2 1 4 4 H 1.48502 * 109.47077 * 270.00162 * 3 2 1 5 5 H 1.48499 * 109.47105 * 29.99674 * 3 2 1 6 6 H 1.48499 * 109.47278 * 149.99728 * 3 2 1 7 7 C 1.37882 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00315 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99806 * 179.97438 * 7 2 1 10 10 N 1.46892 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00363 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47263 * 325.00495 * 11 10 9 13 13 C 1.53006 * 109.46626 * 85.00189 * 11 10 9 14 14 C 1.52999 * 109.46626 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47592 * 300.00035 * 14 13 11 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 14 13 17 17 H 1.08996 * 109.47134 * 59.99508 * 16 15 14 18 18 O 1.42898 * 109.47379 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47489 * 205.00162 * 11 10 9 20 20 H 0.97000 * 119.99891 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47305 * 59.99968 * 9 7 2 22 22 H 1.09001 * 109.47142 * 300.00403 * 9 7 2 23 23 H 1.00903 * 111.00135 * 303.95790 * 10 9 7 24 24 H 1.08993 * 109.46955 * 300.00347 * 13 11 10 25 25 H 1.09000 * 109.47050 * 60.00176 * 13 11 10 26 26 H 1.09000 * 109.47160 * 60.00369 * 14 13 11 27 27 H 1.09002 * 109.46719 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47140 * 300.00346 * 15 14 13 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 30 30 H 0.96699 * 113.99486 * 299.99672 * 18 16 15 31 31 H 1.09000 * 109.47140 * 300.00408 * 19 11 10 32 32 H 1.09001 * 109.47230 * 59.99552 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 5.4696 -2.6184 -0.0011 12 1 5.8549 -1.7868 -0.5911 13 6 5.9838 -2.5058 1.4356 14 6 7.5133 -2.5474 1.4344 15 6 7.9872 -3.8683 0.8251 16 6 7.4730 -3.9809 -0.6115 17 1 7.8585 -3.1495 -1.2016 18 8 7.9152 -5.2149 -1.1805 19 6 5.9441 -3.9391 -0.6106 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6798 0.8894 22 1 3.8745 -0.6809 -0.8905 23 1 3.6259 -3.0953 0.7817 24 1 5.6458 -1.5650 1.8698 25 1 5.5986 -3.3375 2.0255 26 1 7.8989 -1.7160 0.8443 27 1 7.8796 -2.4677 2.4579 28 1 7.6016 -4.6997 1.4152 29 1 9.0768 -3.8981 0.8247 30 1 8.8768 -5.3105 -1.2133 31 1 5.5588 -4.7707 -0.0206 32 1 5.5776 -4.0193 -1.6341 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307326606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = -96.890474 kcal Electronic energy + Delta-G solvation = -12981.162580 eV Core-core repulsion = 10746.467125 eV Total energy + Delta-G solvation = -2234.695455 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19131 -37.47543 -35.53779 -34.19545 -31.31765 -30.22155 -27.89336 -23.69794 -23.22451 -22.50327 -20.93586 -19.03561 -18.05676 -16.74656 -16.51229 -15.75159 -15.53791 -15.42391 -14.66139 -14.46289 -14.38855 -13.82300 -13.45731 -13.36726 -12.74703 -12.58314 -12.42879 -12.03217 -11.90897 -11.71640 -11.58068 -11.47743 -11.23509 -10.82895 -10.70475 -9.09929 -8.31753 -6.36625 1.33654 1.35415 1.46445 2.32663 3.02107 3.09632 3.62730 3.74877 3.99125 4.14018 4.17416 4.29246 4.42354 4.53698 4.55895 4.65749 4.77044 4.95999 5.05044 5.08664 5.16809 5.17792 5.21996 5.39412 5.44147 5.51499 5.96562 6.54998 6.64664 6.75360 6.96196 7.28417 8.85209 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058266 B = 0.007679 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.438909 B = 3645.416522 C = 3852.228084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.178 3.822 10 N -0.689 5.689 11 C 0.089 3.911 12 H 0.068 0.932 13 C -0.148 4.148 14 C -0.108 4.108 15 C -0.141 4.141 16 C 0.110 3.890 17 H 0.062 0.938 18 O -0.585 6.585 19 C -0.096 4.096 20 H 0.268 0.732 21 H -0.009 1.009 22 H 0.021 0.979 23 H 0.337 0.663 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.395 0.605 31 H 0.058 0.942 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.995 -4.239 2.283 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.053 0.947 9 C 0.050 3.950 10 N -0.319 5.319 11 C -0.021 4.021 12 H 0.087 0.913 13 C -0.188 4.188 14 C -0.146 4.146 15 C -0.179 4.179 16 C 0.051 3.949 17 H 0.080 0.920 18 O -0.393 6.393 19 C -0.134 4.134 20 H 0.077 0.923 21 H 0.009 0.991 22 H 0.040 0.960 23 H 0.154 0.846 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.244 0.756 31 H 0.077 0.923 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.138 -4.296 1.536 19.674 hybrid contribution 0.199 0.996 0.873 1.340 sum 19.337 -3.300 2.409 19.764 Atomic orbital electron populations 1.70060 1.08232 1.28289 1.52242 1.25919 0.95680 1.03427 0.94051 0.85634 0.79362 0.78166 0.79283 1.19086 1.20472 1.17206 1.21373 0.91561 0.93423 1.50622 0.94681 1.19737 0.93487 0.87121 0.94687 1.60389 1.06843 1.14738 1.49890 1.21531 0.87543 0.97361 0.95691 0.91342 1.22279 0.97848 1.01574 0.97065 1.21401 0.93556 0.97711 1.01946 1.22203 1.01829 0.98077 0.95798 1.21705 0.93606 0.86137 0.93487 0.91992 1.86491 1.28993 1.39278 1.84584 1.21344 0.94185 0.96903 1.00968 0.92300 0.99134 0.96046 0.84574 0.93013 0.91781 0.91256 0.90251 0.91741 0.89200 0.75562 0.92291 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 2 C 0.01 0.40 5.47 84.66 0.46 0.86 16 3 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -31.62 9.87 25.60 0.25 -31.36 16 8 H 0.03 2.32 8.06 -2.92 -0.02 2.30 16 9 C 0.18 8.68 4.31 85.56 0.37 9.05 16 10 N -0.69 -29.09 6.24 -495.59 -3.09 -32.18 16 11 C 0.09 2.90 2.47 44.92 0.11 3.01 16 12 H 0.07 2.26 7.80 -2.39 -0.02 2.24 16 13 C -0.15 -4.06 5.17 30.60 0.16 -3.91 16 14 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 15 C -0.14 -2.54 5.54 30.59 0.17 -2.37 16 16 C 0.11 2.44 3.47 30.58 0.11 2.55 16 17 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 18 O -0.58 -12.76 13.32 -148.98 -1.98 -14.75 16 19 C -0.10 -2.84 5.18 30.58 0.16 -2.68 16 20 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 21 H -0.01 -0.42 6.49 -2.39 -0.02 -0.44 16 22 H 0.02 1.04 7.48 -2.39 -0.02 1.03 16 23 H 0.34 14.04 8.47 -89.69 -0.76 13.28 16 24 H 0.05 1.56 7.45 -2.39 -0.02 1.54 16 25 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.39 4.50 9.08 -74.06 -0.67 3.83 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -68.95 257.40 -1.31 -70.26 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.39 Total: 17.06 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 1.97 Total: -26.81 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -2.79 Total: -92.06 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -1.98 Total: -14.75 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -68.95 -1.31 -70.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307326606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.632 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds