Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99641 * 2 1 4 4 H 1.48493 * 109.47048 * 269.99961 * 3 2 1 5 5 H 1.48499 * 109.46739 * 30.00070 * 3 2 1 6 6 H 1.48496 * 109.46864 * 149.99745 * 3 2 1 7 7 C 1.37878 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99807 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99890 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47401 * 34.99821 * 11 10 9 13 13 C 1.53002 * 109.46860 * 274.99873 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 18 18 O 1.42895 * 109.47074 * 299.99707 * 16 15 14 19 19 C 1.53000 * 109.46769 * 155.00113 * 11 10 9 20 20 H 0.97002 * 120.00684 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47143 * 59.99676 * 9 7 2 22 22 H 1.09005 * 109.47073 * 300.00275 * 9 7 2 23 23 H 1.00898 * 110.99796 * 56.04201 * 10 9 7 24 24 H 1.09002 * 109.47075 * 299.99593 * 13 11 10 25 25 H 1.08996 * 109.47407 * 60.00550 * 13 11 10 26 26 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 27 27 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 28 28 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 29 29 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 30 30 H 0.96700 * 114.00516 * 300.00544 * 18 16 15 31 31 H 1.09001 * 109.47194 * 299.99524 * 19 11 10 32 32 H 1.08992 * 109.47399 * 59.99697 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0018 11 6 1.5056 -4.9070 0.0024 12 1 0.5926 -4.8256 -0.5875 13 6 1.1514 -5.2943 1.4396 14 6 0.4226 -6.6396 1.4403 15 6 1.3294 -7.7113 0.8320 16 6 1.6836 -7.3239 -0.6052 17 1 2.3293 -8.0877 -1.0386 18 8 0.4867 -7.2177 -1.3786 19 6 2.4121 -5.9789 -0.6060 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.8401 -3.5482 0.7836 24 1 2.0644 -5.3758 2.0295 25 1 0.5056 -4.5307 1.8731 26 1 0.1706 -6.9158 2.4642 27 1 -0.4904 -6.5585 0.8504 28 1 2.2424 -7.7924 1.4219 29 1 0.8103 -8.6698 0.8329 30 1 -0.0275 -8.0354 -1.4220 31 1 2.6644 -5.7030 -1.6299 32 1 3.3250 -6.0603 -0.0162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307326610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -73.717781 kcal Electronic energy + Delta-G solvation = -13066.287322 eV Core-core repulsion = 10832.596711 eV Total energy + Delta-G solvation = -2233.690612 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03716 -35.77553 -33.65410 -32.15232 -29.90649 -28.68883 -25.69863 -22.30824 -22.01936 -20.85247 -19.56474 -16.83983 -16.28716 -15.48619 -14.83026 -14.42436 -14.01865 -13.68456 -13.19268 -12.63440 -12.30901 -12.10309 -12.00779 -11.63860 -11.18752 -10.82564 -10.80106 -10.64922 -10.61066 -10.31865 -10.05727 -9.66932 -9.53427 -9.07171 -8.42555 -7.15698 -5.97579 -3.99385 3.35608 3.40929 3.44845 4.41054 4.47202 4.85911 4.94073 5.02668 5.37822 5.38170 5.46097 5.61432 5.69957 5.75346 5.85666 5.97151 6.11868 6.24479 6.33522 6.42076 6.50104 6.75154 6.83458 7.37505 7.53319 7.79602 7.85518 8.20991 8.50254 8.71857 9.10549 9.65200 11.13454 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.067854 B = 0.007156 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.554137 B = 3911.676538 C = 3960.468324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.688 5.688 11 C 0.092 3.908 12 H 0.078 0.922 13 C -0.148 4.148 14 C -0.110 4.110 15 C -0.150 4.150 16 C 0.105 3.895 17 H 0.049 0.951 18 O -0.559 6.559 19 C -0.099 4.099 20 H 0.261 0.739 21 H 0.027 0.973 22 H -0.014 1.014 23 H 0.326 0.674 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.369 0.631 31 H 0.072 0.928 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -14.916 1.819 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.316 5.316 11 C -0.019 4.019 12 H 0.097 0.903 13 C -0.187 4.187 14 C -0.149 4.149 15 C -0.188 4.188 16 C 0.046 3.954 17 H 0.067 0.933 18 O -0.363 6.363 19 C -0.137 4.137 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.004 0.996 23 H 0.142 0.858 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.214 0.786 31 H 0.091 0.909 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.185 -14.128 1.050 14.335 hybrid contribution -0.152 0.289 1.087 1.135 sum 2.033 -13.840 2.137 14.150 Atomic orbital electron populations 1.69968 1.06068 1.26683 1.51053 1.24997 0.94868 0.99326 0.95443 0.86492 0.79661 0.83087 0.78106 1.20629 1.21341 1.19894 1.21226 0.93504 0.90397 1.50125 0.92037 1.19554 0.90618 0.87287 0.95694 1.60743 1.20999 1.01330 1.48533 1.21422 0.96880 0.90049 0.93573 0.90348 1.22300 1.00200 0.96841 0.99358 1.21382 0.98923 0.94812 0.99742 1.22246 1.00569 0.98464 0.97498 1.21836 0.86128 0.97870 0.89548 0.93328 1.86634 1.37216 1.39001 1.73451 1.21519 0.97557 0.92323 1.02309 0.92975 0.95515 0.99591 0.85756 0.92603 0.91800 0.92817 0.91484 0.91346 0.92370 0.78566 0.90912 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.05 9.32 -34.44 -0.32 -15.37 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.20 5.34 5.24 -4.98 -0.03 5.31 16 10 N -0.69 -15.45 6.24 -107.99 -0.67 -16.12 16 11 C 0.09 1.73 2.32 -67.71 -0.16 1.57 16 12 H 0.08 1.69 7.34 -51.93 -0.38 1.31 16 13 C -0.15 -2.44 5.17 -26.73 -0.14 -2.58 16 14 C -0.11 -1.49 5.78 -26.73 -0.15 -1.64 16 15 C -0.15 -1.70 5.64 -26.73 -0.15 -1.85 16 16 C 0.11 1.34 3.77 -26.75 -0.10 1.24 16 17 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 18 O -0.56 -7.58 11.97 -35.23 -0.42 -8.00 16 19 C -0.10 -1.55 5.27 -26.75 -0.14 -1.69 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.03 0.80 8.06 -51.93 -0.42 0.38 16 22 H -0.01 -0.39 7.43 -51.93 -0.39 -0.78 16 23 H 0.33 6.96 8.46 -39.29 -0.33 6.63 16 24 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.06 1.19 7.45 -51.93 -0.39 0.80 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.37 3.23 9.08 45.56 0.41 3.65 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 258.93 15.07 3.90 3.90 Total: -1.00 -31.78 258.93 -7.16 -38.94 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.39 Total: 4.44 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.29 Total: -13.50 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.06 Total: -42.94 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.42 Total: -8.00 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.78 -7.16 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307326610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.775 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds