Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99641 * 2 1 4 4 H 1.48493 * 109.47048 * 269.99961 * 3 2 1 5 5 H 1.48499 * 109.46739 * 30.00070 * 3 2 1 6 6 H 1.48496 * 109.46864 * 149.99745 * 3 2 1 7 7 C 1.37878 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99807 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99890 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47401 * 34.99821 * 11 10 9 13 13 C 1.53002 * 109.46860 * 274.99873 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 18 18 O 1.42895 * 109.47074 * 299.99707 * 16 15 14 19 19 C 1.53000 * 109.46769 * 155.00113 * 11 10 9 20 20 H 0.97002 * 120.00684 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47143 * 59.99676 * 9 7 2 22 22 H 1.09005 * 109.47073 * 300.00275 * 9 7 2 23 23 H 1.00898 * 110.99796 * 56.04201 * 10 9 7 24 24 H 1.09002 * 109.47075 * 299.99593 * 13 11 10 25 25 H 1.08996 * 109.47407 * 60.00550 * 13 11 10 26 26 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 27 27 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 28 28 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 29 29 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 30 30 H 0.96700 * 114.00516 * 300.00544 * 18 16 15 31 31 H 1.09001 * 109.47194 * 299.99524 * 19 11 10 32 32 H 1.08992 * 109.47399 * 59.99697 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0018 11 6 1.5056 -4.9070 0.0024 12 1 0.5926 -4.8256 -0.5875 13 6 1.1514 -5.2943 1.4396 14 6 0.4226 -6.6396 1.4403 15 6 1.3294 -7.7113 0.8320 16 6 1.6836 -7.3239 -0.6052 17 1 2.3293 -8.0877 -1.0386 18 8 0.4867 -7.2177 -1.3786 19 6 2.4121 -5.9789 -0.6060 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.8401 -3.5482 0.7836 24 1 2.0644 -5.3758 2.0295 25 1 0.5056 -4.5307 1.8731 26 1 0.1706 -6.9158 2.4642 27 1 -0.4904 -6.5585 0.8504 28 1 2.2424 -7.7924 1.4219 29 1 0.8103 -8.6698 0.8329 30 1 -0.0275 -8.0354 -1.4220 31 1 2.6644 -5.7030 -1.6299 32 1 3.3250 -6.0603 -0.0162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307326610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = -98.645126 kcal Electronic energy + Delta-G solvation = -13067.368253 eV Core-core repulsion = 10832.596711 eV Total energy + Delta-G solvation = -2234.771542 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25132 -37.24279 -35.34922 -34.01935 -31.21034 -30.20439 -27.65834 -24.08465 -23.33684 -22.44826 -20.80332 -18.64183 -17.67995 -16.85146 -16.71745 -15.80242 -15.47506 -15.18392 -14.78577 -14.25647 -13.92793 -13.56868 -13.40806 -13.21202 -12.81783 -12.61778 -12.48160 -12.11936 -12.05827 -11.79427 -11.56415 -11.40808 -10.99138 -10.67747 -10.56991 -9.04316 -8.23680 -6.36204 1.39596 1.42627 1.53777 2.39025 3.08778 3.45984 3.52751 3.84897 3.95481 4.09961 4.23652 4.39117 4.51660 4.60060 4.66765 4.75154 4.98357 5.02287 5.07769 5.13623 5.22083 5.27918 5.31276 5.45715 5.48178 5.62209 6.01566 6.46621 6.73775 6.90764 7.04565 7.35163 8.88102 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.067854 B = 0.007156 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.554137 B = 3911.676538 C = 3960.468324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.213 3.787 10 N -0.688 5.688 11 C 0.090 3.910 12 H 0.041 0.959 13 C -0.142 4.142 14 C -0.107 4.107 15 C -0.141 4.141 16 C 0.107 3.893 17 H 0.079 0.921 18 O -0.586 6.586 19 C -0.096 4.096 20 H 0.265 0.735 21 H -0.012 1.012 22 H -0.040 1.040 23 H 0.334 0.666 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.390 0.610 31 H 0.052 0.948 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -16.070 2.407 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.085 3.915 10 N -0.317 5.317 11 C -0.020 4.020 12 H 0.060 0.940 13 C -0.182 4.182 14 C -0.146 4.146 15 C -0.179 4.179 16 C 0.048 3.952 17 H 0.097 0.903 18 O -0.394 6.394 19 C -0.134 4.134 20 H 0.074 0.926 21 H 0.007 0.993 22 H -0.022 1.022 23 H 0.152 0.848 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.239 0.761 31 H 0.071 0.929 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.666 -15.328 1.641 15.845 hybrid contribution -0.666 0.605 0.882 1.260 sum 3.000 -14.723 2.523 15.235 Atomic orbital electron populations 1.70111 1.07972 1.28063 1.51452 1.26040 0.95836 1.03647 0.94442 0.85261 0.78509 0.77570 0.78509 1.19820 1.20513 1.18495 1.21588 0.93878 0.91456 1.50769 0.91586 1.19141 0.90615 0.89109 0.92596 1.60655 1.20365 1.01668 1.49025 1.21468 0.96078 0.89380 0.95060 0.94047 1.22199 1.00690 0.97993 0.97287 1.21362 0.98539 0.93646 1.01008 1.22213 1.00925 0.98643 0.96110 1.21860 0.86167 0.96315 0.90868 0.90287 1.86594 1.37972 1.41070 1.73790 1.21500 0.97977 0.92958 1.00982 0.92582 0.99341 1.02240 0.84840 0.90922 0.95124 0.90924 0.92913 0.89808 0.89265 0.76134 0.92882 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.88 13.29 21.45 0.28 -58.59 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.98 45.61 29.54 68.60 2.03 47.64 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -32.29 9.32 25.60 0.24 -32.05 16 8 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 9 C 0.21 12.30 5.24 85.56 0.45 12.75 16 10 N -0.69 -31.95 6.24 -495.56 -3.09 -35.04 16 11 C 0.09 3.50 2.32 44.92 0.10 3.61 16 12 H 0.04 1.90 7.34 -2.39 -0.02 1.88 16 13 C -0.14 -4.73 5.17 30.60 0.16 -4.57 16 14 C -0.11 -2.72 5.78 30.60 0.18 -2.54 16 15 C -0.14 -2.67 5.64 30.59 0.17 -2.49 16 16 C 0.11 2.43 3.77 30.58 0.12 2.55 16 17 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 18 O -0.59 -15.15 11.97 -148.98 -1.78 -16.93 16 19 C -0.10 -2.92 5.27 30.58 0.16 -2.76 16 20 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 21 H -0.01 -0.74 8.06 -2.39 -0.02 -0.76 16 22 H -0.04 -2.46 7.43 -2.38 -0.02 -2.48 16 23 H 0.33 14.46 8.46 -89.70 -0.76 13.70 16 24 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 25 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.39 6.00 9.08 -74.06 -0.67 5.33 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -71.02 258.93 -0.86 -71.87 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.33 Total: 16.21 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 2.04 Total: -25.16 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -2.81 Total: -93.63 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.78 Total: -16.93 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.02 -0.86 -71.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307326610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.771 kcal (2) G-P(sol) polarization free energy of solvation -71.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds