Wall clock time and date at job start Mon Mar 30 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00079 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99598 * 2 1 3 13 13 C 1.53114 * 109.52791 * 179.87473 * 12 2 1 14 14 C 1.53045 * 109.27723 * 182.50874 * 13 12 2 15 15 N 1.46841 * 109.57714 * 59.08296 * 14 13 12 16 16 C 1.46848 * 111.19913 * 298.29215 * 15 14 13 17 17 C 1.53036 * 109.52289 * 61.74021 * 16 15 14 18 18 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 19 19 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 20 20 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 21 21 H 0.96698 * 114.00355 * 180.02562 * 3 2 1 22 22 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.52309 * 300.00374 * 12 2 1 24 24 H 1.08999 * 109.50333 * 302.38513 * 13 12 2 25 25 H 1.08995 * 109.50574 * 62.49849 * 13 12 2 26 26 H 1.09001 * 109.40902 * 299.06226 * 14 13 12 27 27 H 1.09000 * 109.45117 * 179.12873 * 14 13 12 28 28 H 1.00896 * 110.99936 * 62.38764 * 15 14 13 29 29 H 1.09004 * 109.46015 * 301.72976 * 16 15 14 30 30 H 1.09001 * 109.45782 * 181.75712 * 16 15 14 31 31 H 1.09007 * 109.50297 * 180.88595 * 17 16 15 32 32 H 1.08996 * 109.53507 * 60.78279 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.8074 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5197 4.0083 12 6 2.0400 -0.7213 -1.2492 13 6 3.5712 -0.7193 -1.2520 14 6 4.0749 -1.3866 -2.5339 15 7 3.5632 -0.6580 -3.7017 16 6 2.0957 -0.6881 -3.7452 17 6 1.5329 0.0014 -2.5002 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 2.9703 1.4235 -0.0004 22 1 0.7082 1.1609 3.4843 23 1 1.6771 -1.7492 -1.2500 24 1 3.9338 0.3077 -1.2107 25 1 3.9374 -1.2701 -0.3857 26 1 3.7244 -2.4181 -2.5672 27 1 5.1648 -1.3728 -2.5461 28 1 3.9059 0.2909 -3.7144 29 1 1.7544 -1.7229 -3.7727 30 1 1.7481 -0.1672 -4.6373 31 1 0.4437 -0.0350 -2.5251 32 1 1.8619 1.0403 -2.4788 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307413590.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:20 Heat of formation + Delta-G solvation = -86.112029 kcal Electronic energy + Delta-G solvation = -13784.432085 eV Core-core repulsion = 11550.204018 eV Total energy + Delta-G solvation = -2234.228066 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.31128 -37.41806 -34.26721 -32.94511 -31.74507 -30.01285 -27.33650 -24.75123 -23.51415 -21.91913 -20.50146 -18.88452 -17.13363 -16.68764 -16.39030 -15.49917 -15.42952 -15.00053 -14.59697 -13.88613 -13.76270 -13.21293 -13.12165 -12.85682 -12.72994 -12.63717 -12.55413 -12.18105 -11.97091 -11.92605 -11.36613 -11.32288 -10.66374 -10.50047 -10.04578 -9.16107 -8.00927 -6.27531 1.39668 1.40478 1.47554 2.40935 3.18066 3.49148 3.94862 4.05425 4.24139 4.29062 4.34860 4.57346 4.63107 4.73925 4.89811 4.99754 5.03276 5.10223 5.16925 5.25073 5.28281 5.43828 5.53020 5.62886 5.81491 6.06426 6.15936 6.29473 6.54427 6.80386 7.40377 7.64048 8.96137 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049648 B = 0.011634 C = 0.010332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.837415 B = 2406.153521 C = 2709.249070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.245 3.755 3 O -0.575 6.575 4 C -0.567 4.567 5 H 0.053 0.947 6 C 0.031 3.969 7 N -0.890 5.890 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.273 1.273 12 C -0.096 4.096 13 C -0.137 4.137 14 C 0.063 3.937 15 N -0.684 5.684 16 C 0.063 3.937 17 C -0.140 4.140 18 H 0.031 0.969 19 H 0.054 0.946 20 H 0.038 0.962 21 H 0.350 0.650 22 H 0.256 0.744 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.343 0.657 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -2.919 -8.741 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.206 3.794 3 O -0.380 6.380 4 C -0.605 4.605 5 H 0.071 0.929 6 C -0.171 4.171 7 N -0.527 5.527 8 Si 0.771 3.229 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.115 4.115 13 C -0.176 4.176 14 C -0.067 4.067 15 N -0.312 5.312 16 C -0.067 4.067 17 C -0.180 4.180 18 H 0.049 0.951 19 H 0.073 0.927 20 H 0.057 0.943 21 H 0.195 0.805 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.161 0.839 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.401 -3.224 -9.065 10.205 hybrid contribution 0.326 0.160 2.078 2.110 sum 3.727 -3.064 -6.987 8.491 Atomic orbital electron populations 1.21566 0.97199 0.98911 1.00167 1.18747 0.90825 0.79391 0.90402 1.86459 1.24058 1.30312 1.97177 1.21947 1.32938 1.13206 0.92373 0.92880 1.25720 0.94604 0.95121 1.01654 1.70142 1.36113 1.23169 1.23308 0.85848 0.78928 0.78817 0.79340 1.19606 1.21375 1.19848 1.21627 0.95851 0.98496 0.95573 1.22115 0.95441 1.00736 0.99300 1.21999 0.99939 0.97619 0.87104 1.60787 1.08688 1.20650 1.41108 1.22014 0.87595 1.00658 0.96432 1.22195 1.00560 0.99549 0.95652 0.95057 0.92672 0.94270 0.80510 0.93473 0.93324 0.92736 0.92567 0.91622 0.89634 0.83916 0.91452 0.89557 0.92594 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.27 71.98 0.60 -5.40 16 2 C 0.25 11.87 0.42 -11.54 0.00 11.87 16 3 O -0.58 -29.03 11.61 -148.98 -1.73 -30.76 16 4 C -0.57 -30.12 7.52 25.60 0.19 -29.93 16 5 H 0.05 2.78 6.72 -2.91 -0.02 2.76 16 6 C 0.03 1.70 5.24 84.66 0.44 2.14 16 7 N -0.89 -51.67 10.87 21.45 0.23 -51.44 16 8 Si 0.94 43.16 29.54 68.60 2.03 45.18 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C -0.10 -3.77 1.63 -10.71 -0.02 -3.78 16 13 C -0.14 -4.70 4.82 30.65 0.15 -4.55 16 14 C 0.06 1.74 6.55 86.33 0.57 2.31 16 15 N -0.68 -17.87 6.87 -514.00 -3.53 -21.40 16 16 C 0.06 1.69 6.55 86.33 0.57 2.26 16 17 C -0.14 -4.72 4.82 30.65 0.15 -4.57 16 18 H 0.03 1.40 6.49 -2.39 -0.02 1.39 16 19 H 0.05 3.09 6.07 -2.39 -0.01 3.07 16 20 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 21 H 0.35 16.06 7.27 -74.06 -0.54 15.52 16 22 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.05 1.86 6.67 -2.39 -0.02 1.85 16 25 H 0.06 2.12 6.72 -2.39 -0.02 2.11 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.34 8.34 8.86 -89.70 -0.79 7.54 16 29 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.93 6.58 -2.38 -0.02 1.92 16 32 H 0.05 1.91 7.61 -2.39 -0.02 1.90 16 Total: -1.00 -59.64 246.20 -0.58 -60.22 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.22 Total: 27.85 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 2.64 Total: -29.65 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -3.30 Total: -72.84 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.73 Total: -30.76 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -59.64 -0.58 -60.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307413590.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.888 kcal (2) G-P(sol) polarization free energy of solvation -59.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds