Wall clock time and date at job start Mon Mar 30 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46934 * 2 1 4 4 C 1.50696 * 109.47291 * 239.99965 * 2 1 3 5 5 H 1.07998 * 120.00279 * 264.88485 * 4 2 1 6 6 C 1.37875 * 120.00121 * 84.89118 * 4 2 1 7 7 N 1.31513 * 120.00168 * 176.14667 * 6 4 2 8 8 Si 1.86802 * 120.00165 * 356.14377 * 6 4 2 9 9 H 1.48496 * 109.47292 * 86.50743 * 8 6 4 10 10 H 1.48494 * 109.47356 * 206.51189 * 8 6 4 11 11 H 1.48500 * 109.46883 * 326.50976 * 8 6 4 12 12 C 1.53002 * 109.47338 * 119.99497 * 2 1 3 13 13 C 1.53123 * 109.51874 * 64.68434 * 12 2 1 14 14 C 1.53034 * 109.27849 * 182.44137 * 13 12 2 15 15 N 1.46844 * 109.52377 * 59.17829 * 14 13 12 16 16 C 1.46849 * 111.20224 * 298.26273 * 15 14 13 17 17 C 1.53036 * 109.52454 * 61.73781 * 16 15 14 18 18 H 1.09002 * 109.47152 * 306.30689 * 1 2 3 19 19 H 1.09001 * 109.47057 * 186.30676 * 1 2 3 20 20 H 1.09001 * 109.47333 * 66.30963 * 1 2 3 21 21 H 0.96702 * 114.00162 * 179.97438 * 3 2 1 22 22 H 0.97002 * 119.99988 * 180.02562 * 7 6 4 23 23 H 1.08998 * 109.52715 * 184.87649 * 12 2 1 24 24 H 1.09001 * 109.50708 * 302.38233 * 13 12 2 25 25 H 1.09003 * 109.50153 * 62.50322 * 13 12 2 26 26 H 1.09000 * 109.46425 * 299.16698 * 14 13 12 27 27 H 1.09002 * 109.46243 * 179.19982 * 14 13 12 28 28 H 1.00907 * 111.00334 * 174.16156 * 15 14 13 29 29 H 1.09007 * 109.45638 * 301.72528 * 16 15 14 30 30 H 1.08992 * 109.46665 * 181.75954 * 16 15 14 31 31 H 1.08996 * 109.50493 * 180.88293 * 17 16 15 32 32 H 1.08999 * 109.50278 * 60.76097 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2910 -1.7578 -1.1815 6 6 2.1619 -0.0232 -2.4186 7 7 2.6714 -0.6224 -3.4727 8 14 1.6138 1.7591 -2.5315 9 1 2.7231 2.6465 -2.0988 10 1 1.2451 2.0757 -3.9346 11 1 0.4374 1.9718 -1.6505 12 6 2.0400 -0.7211 1.2493 13 6 1.6288 -2.1950 1.1930 14 6 2.0885 -2.8971 2.4727 15 7 1.4774 -2.2440 3.6374 16 6 1.8956 -0.8400 3.7391 17 6 1.4301 -0.0765 2.4971 18 1 -0.3633 0.6085 0.8282 19 1 -0.3633 -1.0215 0.1129 20 1 -0.3634 0.4129 -0.9411 21 1 2.9703 1.4238 0.0004 22 1 2.7628 -0.1387 -4.3085 23 1 3.1265 -0.6466 1.2949 24 1 0.5445 -2.2674 1.1077 25 1 2.0948 -2.6702 0.3298 26 1 3.1740 -2.8364 2.5504 27 1 1.7847 -3.9435 2.4421 28 1 1.6891 -2.7467 4.4863 29 1 2.9821 -0.7890 3.8107 30 1 1.4517 -0.3923 4.6282 31 1 1.7541 0.9619 2.5656 32 1 0.3427 -0.1155 2.4323 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307413591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:22 Heat of formation + Delta-G solvation = -84.034520 kcal Electronic energy + Delta-G solvation = -13824.055423 eV Core-core repulsion = 11589.917444 eV Total energy + Delta-G solvation = -2234.137979 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.37818 -37.79033 -34.40326 -33.67204 -31.64559 -30.33032 -27.33368 -25.10342 -23.74368 -21.76233 -19.97523 -19.21673 -17.56362 -17.05879 -16.72081 -15.52144 -15.44228 -14.87331 -14.67354 -14.46884 -13.91180 -13.73896 -13.38619 -13.30505 -12.92085 -12.86375 -12.29397 -12.08128 -11.72770 -11.54495 -11.45101 -11.24380 -10.82464 -10.53299 -9.97393 -9.32698 -8.28118 -6.38803 1.47069 1.52235 1.74566 2.47696 3.06345 3.38620 3.68734 4.02890 4.06563 4.19457 4.39908 4.52805 4.59353 4.71660 4.77067 4.86999 4.94504 4.99409 5.12898 5.17793 5.20623 5.34613 5.45528 5.49347 5.70935 5.83352 6.11850 6.17247 6.62740 6.70073 7.05364 7.39866 8.84783 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053844 B = 0.012387 C = 0.011052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.894840 B = 2259.840708 C = 2532.834502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.219 3.781 3 O -0.571 6.571 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.945 5.945 8 Si 1.000 3.000 9 H -0.285 1.285 10 H -0.343 1.343 11 H -0.259 1.259 12 C -0.089 4.089 13 C -0.103 4.103 14 C 0.064 3.936 15 N -0.693 5.693 16 C 0.062 3.938 17 C -0.108 4.108 18 H 0.055 0.945 19 H 0.065 0.935 20 H 0.032 0.968 21 H 0.374 0.626 22 H 0.262 0.738 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.352 0.648 29 H 0.027 0.973 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 -0.093 14.208 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.180 3.820 3 O -0.380 6.380 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.835 3.165 9 H -0.212 1.212 10 H -0.276 1.276 11 H -0.185 1.185 12 C -0.108 4.108 13 C -0.141 4.141 14 C -0.065 4.065 15 N -0.325 5.325 16 C -0.067 4.067 17 C -0.146 4.146 18 H 0.073 0.927 19 H 0.084 0.916 20 H 0.051 0.949 21 H 0.222 0.778 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.101 0.899 28 H 0.171 0.829 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.611 0.165 13.747 13.993 hybrid contribution 1.549 0.304 -0.623 1.697 sum -1.062 0.469 13.123 13.175 Atomic orbital electron populations 1.21946 0.95375 1.01080 1.00009 1.19220 0.91942 0.78697 0.92106 1.86104 1.26875 1.30379 1.94624 1.21885 1.43815 0.97912 0.94622 0.93045 1.25855 0.93873 1.03191 0.95126 1.70097 1.46292 1.39494 1.02572 0.84872 0.80075 0.79485 0.72051 1.21227 1.27635 1.18470 1.21539 0.98645 0.95664 0.94974 1.21554 1.01029 0.94967 0.96500 1.21880 0.95861 0.98216 0.90550 1.60239 1.62959 1.03105 1.06223 1.21926 0.97491 0.88860 0.98419 1.21633 1.00953 0.98690 0.93298 0.92659 0.91596 0.94905 0.77771 0.92918 0.93308 0.92073 0.93231 0.95666 0.89916 0.82927 0.95460 0.89233 0.91493 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 7.59 71.98 0.55 -4.81 16 2 C 0.22 9.71 0.43 -11.54 0.00 9.70 16 3 O -0.57 -24.63 8.11 -148.98 -1.21 -25.84 16 4 C -0.54 -29.72 8.35 25.60 0.21 -29.50 16 5 H 0.05 3.07 6.10 -2.91 -0.02 3.05 16 6 C 0.02 1.01 5.46 84.65 0.46 1.48 16 7 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 8 Si 1.00 50.07 24.16 68.60 1.66 51.72 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 10 H -0.34 -17.81 7.11 99.48 0.71 -17.11 16 11 H -0.26 -12.60 5.38 99.48 0.54 -12.06 16 12 C -0.09 -3.31 1.82 -10.71 -0.02 -3.33 16 13 C -0.10 -3.69 4.81 30.65 0.15 -3.54 16 14 C 0.06 1.80 6.55 86.33 0.57 2.37 16 15 N -0.69 -17.10 6.84 -514.01 -3.52 -20.62 16 16 C 0.06 1.54 6.55 86.32 0.57 2.10 16 17 C -0.11 -3.31 4.84 30.65 0.15 -3.17 16 18 H 0.05 2.07 6.68 -2.39 -0.02 2.06 16 19 H 0.07 2.65 6.24 -2.39 -0.01 2.63 16 20 H 0.03 1.48 5.85 -2.39 -0.01 1.47 16 21 H 0.37 14.62 8.79 -74.06 -0.65 13.97 16 22 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 2.25 6.33 -2.39 -0.02 2.24 16 25 H 0.05 2.05 6.20 -2.39 -0.01 2.04 16 26 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.35 6.67 8.90 -89.69 -0.80 5.87 16 29 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.01 7.90 -2.39 -0.02 1.99 16 32 H 0.06 2.06 6.36 -2.39 -0.02 2.05 16 Total: -1.00 -64.38 237.44 -0.64 -65.02 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.49 Total: 17.18 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 2.62 Total: -28.70 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -3.22 Total: -79.37 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.21 Total: -25.84 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.66 Total: 51.72 kcal Total: -64.38 -0.64 -65.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307413591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.019 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds