Wall clock time and date at job start Mon Mar 30 2020 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99972 * 2 1 4 4 C 1.52996 * 110.62673 * 303.10208 * 3 2 1 5 5 C 1.55422 * 110.84462 * 66.28861 * 3 2 1 6 6 C 1.54908 * 101.52379 * 82.82675 * 5 3 2 7 7 N 1.47846 * 104.89238 * 37.06612 * 6 5 3 8 8 C 1.46900 * 111.00020 * 213.57993 * 7 6 5 9 9 C 1.50710 * 109.46867 * 69.87419 * 8 7 6 10 10 H 1.08001 * 119.99894 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99915 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99847 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99948 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47382 * 59.99606 * 13 11 9 15 15 H 1.48504 * 109.47094 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47183 * 299.99369 * 13 11 9 17 17 C 1.47448 * 108.56553 * 335.84749 * 7 6 5 18 18 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46995 * 300.00369 * 1 2 3 20 20 H 1.09001 * 109.46818 * 60.00236 * 1 2 3 21 21 H 1.09008 * 109.47670 * 296.89596 * 4 3 2 22 22 H 1.09001 * 109.47483 * 56.89611 * 4 3 2 23 23 H 1.09001 * 109.46951 * 176.90000 * 4 3 2 24 24 H 1.08998 * 111.10859 * 324.75828 * 5 3 2 25 25 H 1.08998 * 111.00401 * 200.84946 * 5 3 2 26 26 H 1.09002 * 110.37460 * 278.18013 * 6 5 3 27 27 H 1.08999 * 110.37548 * 155.95084 * 6 5 3 28 28 H 1.08994 * 109.46902 * 189.87105 * 8 7 6 29 29 H 1.08999 * 109.47217 * 309.87870 * 8 7 6 30 30 H 0.96998 * 120.00151 * 180.02562 * 12 11 9 31 31 H 1.08999 * 109.88737 * 120.39623 * 17 7 6 32 32 H 1.09000 * 109.88899 * 241.58505 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5150 2.1159 -1.1995 5 6 1.7016 2.0483 1.3299 6 6 2.8029 1.4845 2.2620 7 7 3.9958 1.3453 1.3998 8 6 4.8050 0.1876 1.8035 9 6 4.0686 -1.0828 1.4639 10 1 3.0967 -1.0348 0.9955 11 6 4.6354 -2.3061 1.7522 12 7 5.8187 -2.3645 2.3231 13 14 3.7231 -3.8807 1.3307 14 1 3.4787 -3.9346 -0.1330 15 1 4.5410 -5.0511 1.7389 16 1 2.4246 -3.9084 2.0507 17 6 3.5509 1.2167 0.0000 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8401 1.6350 -2.1222 22 1 0.4263 2.1657 -1.1799 23 1 1.9259 3.1243 -1.1511 24 1 0.7086 1.7937 1.7004 25 1 1.8068 3.1263 1.2087 26 1 2.5050 0.5134 2.6574 27 1 3.0029 2.1801 3.0770 28 1 5.7576 0.2079 1.2743 29 1 4.9850 0.2270 2.8778 30 1 6.2177 -3.2251 2.5256 31 1 3.9689 2.0266 -0.5979 32 1 3.8669 0.2543 -0.4027 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307515050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:52 Heat of formation + Delta-G solvation = -40.423041 kcal Electronic energy + Delta-G solvation = -13763.165459 eV Core-core repulsion = 11530.918616 eV Total energy + Delta-G solvation = -2232.246843 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26088 -36.00266 -32.79373 -31.12336 -29.18741 -27.10945 -26.09546 -24.73230 -22.33815 -19.86895 -19.44266 -16.54642 -16.14407 -14.92546 -14.79819 -14.66330 -13.83493 -13.54548 -12.84292 -12.69907 -12.32242 -12.12605 -11.99077 -11.22335 -11.06397 -10.94733 -10.81242 -10.60708 -10.51133 -10.15334 -9.88542 -9.67704 -9.28764 -9.03889 -8.29718 -7.14900 -5.89427 -3.94776 3.39341 3.42542 3.47745 4.20316 4.54391 4.98415 5.09059 5.30522 5.41518 5.43131 5.55859 5.62941 5.74572 5.88781 5.91753 5.93973 6.15851 6.29993 6.40630 6.53198 6.65310 6.82277 6.88247 7.29079 7.68405 7.79321 8.07530 8.15136 8.29319 8.48148 9.21663 9.71337 11.17069 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036151 B = 0.013755 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.345510 B = 2035.158369 C = 2484.363959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.153 4.153 6 C 0.051 3.949 7 N -0.534 5.534 8 C 0.179 3.821 9 C -0.547 4.547 10 H 0.083 0.917 11 C 0.061 3.939 12 N -0.898 5.898 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.059 3.941 18 H 0.078 0.922 19 H 0.038 0.962 20 H 0.037 0.963 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.067 0.933 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 7.198 -4.442 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.273 6.273 3 C 0.052 3.948 4 C -0.226 4.226 5 C -0.191 4.191 6 C -0.077 4.077 7 N -0.257 5.257 8 C 0.053 3.947 9 C -0.586 4.586 10 H 0.101 0.899 11 C -0.140 4.140 12 N -0.538 5.538 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.204 1.204 17 C -0.069 4.069 18 H 0.097 0.903 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.961 7.340 -4.310 12.359 hybrid contribution -1.190 -1.543 -0.209 1.960 sum -10.151 5.796 -4.519 12.533 Atomic orbital electron populations 1.22727 0.83141 1.02026 0.99312 1.88171 1.17995 1.26618 1.94564 1.22851 0.95677 0.83036 0.93270 1.22276 1.00945 1.00503 0.98831 1.23311 0.99303 0.99797 0.96691 1.22823 0.89364 0.99941 0.95574 1.64006 1.17783 1.43021 1.00929 1.19936 0.93014 0.85343 0.96418 1.22158 1.05305 0.91397 1.39760 0.89924 1.24984 0.94815 0.99100 0.95150 1.69961 1.15898 1.25161 1.42751 0.86684 0.79682 0.82857 0.78926 1.20256 1.21643 1.20443 1.22760 0.89114 1.02369 0.92666 0.90304 0.94363 0.94482 0.91953 0.92727 0.91540 0.91585 0.90893 0.92199 0.92166 0.95190 0.95478 0.93076 0.91454 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.36 101.05 1.05 1.41 16 2 O -0.35 -6.96 8.47 -35.23 -0.30 -7.26 16 3 C 0.09 1.62 0.89 -88.64 -0.08 1.54 16 4 C -0.17 -2.31 8.25 37.16 0.31 -2.00 16 5 C -0.15 -2.53 6.10 -24.44 -0.15 -2.68 16 6 C 0.05 1.04 6.45 -2.30 -0.01 1.02 16 7 N -0.53 -12.06 5.41 -232.68 -1.26 -13.32 16 8 C 0.18 4.81 5.11 -4.97 -0.03 4.78 16 9 C -0.55 -15.54 6.76 -34.44 -0.23 -15.77 16 10 H 0.08 2.32 4.82 -52.49 -0.25 2.07 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 13 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 17 C 0.06 1.22 5.56 -2.83 -0.02 1.20 16 18 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 19 H 0.04 0.52 6.41 -51.93 -0.33 0.19 16 20 H 0.04 0.47 6.39 -51.93 -0.33 0.14 16 21 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 22 H 0.05 0.66 6.45 -51.93 -0.33 0.33 16 23 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 24 H 0.07 1.00 6.32 -51.93 -0.33 0.68 16 25 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 26 H 0.06 1.38 7.05 -51.93 -0.37 1.01 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.07 1.24 7.82 -51.93 -0.41 0.83 16 32 H 0.09 2.03 6.20 -51.93 -0.32 1.70 16 LS Contribution 249.52 15.07 3.76 3.76 Total: -1.00 -30.79 249.52 -6.10 -36.89 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.76 Total: -2.16 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 0.74 Total: -8.82 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.52 Total: -39.88 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.30 Total: -7.26 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.79 -6.10 -36.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307515050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.529 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds