Wall clock time and date at job start Mon Mar 30 2020 02:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99972 * 2 1 4 4 C 1.52996 * 110.62673 * 303.10208 * 3 2 1 5 5 C 1.55422 * 110.84462 * 66.28861 * 3 2 1 6 6 C 1.54908 * 101.52379 * 82.82675 * 5 3 2 7 7 N 1.47846 * 104.89238 * 37.06612 * 6 5 3 8 8 C 1.46900 * 111.00020 * 213.57993 * 7 6 5 9 9 C 1.50710 * 109.46867 * 69.87419 * 8 7 6 10 10 H 1.08001 * 119.99894 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99915 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99847 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99948 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47382 * 59.99606 * 13 11 9 15 15 H 1.48504 * 109.47094 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47183 * 299.99369 * 13 11 9 17 17 C 1.47448 * 108.56553 * 335.84749 * 7 6 5 18 18 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46995 * 300.00369 * 1 2 3 20 20 H 1.09001 * 109.46818 * 60.00236 * 1 2 3 21 21 H 1.09008 * 109.47670 * 296.89596 * 4 3 2 22 22 H 1.09001 * 109.47483 * 56.89611 * 4 3 2 23 23 H 1.09001 * 109.46951 * 176.90000 * 4 3 2 24 24 H 1.08998 * 111.10859 * 324.75828 * 5 3 2 25 25 H 1.08998 * 111.00401 * 200.84946 * 5 3 2 26 26 H 1.09002 * 110.37460 * 278.18013 * 6 5 3 27 27 H 1.08999 * 110.37548 * 155.95084 * 6 5 3 28 28 H 1.08994 * 109.46902 * 189.87105 * 8 7 6 29 29 H 1.08999 * 109.47217 * 309.87870 * 8 7 6 30 30 H 0.96998 * 120.00151 * 180.02562 * 12 11 9 31 31 H 1.08999 * 109.88737 * 120.39623 * 17 7 6 32 32 H 1.09000 * 109.88899 * 241.58505 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5150 2.1159 -1.1995 5 6 1.7016 2.0483 1.3299 6 6 2.8029 1.4845 2.2620 7 7 3.9958 1.3453 1.3998 8 6 4.8050 0.1876 1.8035 9 6 4.0686 -1.0828 1.4639 10 1 3.0967 -1.0348 0.9955 11 6 4.6354 -2.3061 1.7522 12 7 5.8187 -2.3645 2.3231 13 14 3.7231 -3.8807 1.3307 14 1 3.4787 -3.9346 -0.1330 15 1 4.5410 -5.0511 1.7389 16 1 2.4246 -3.9084 2.0507 17 6 3.5509 1.2167 0.0000 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8401 1.6350 -2.1222 22 1 0.4263 2.1657 -1.1799 23 1 1.9259 3.1243 -1.1511 24 1 0.7086 1.7937 1.7004 25 1 1.8068 3.1263 1.2087 26 1 2.5050 0.5134 2.6574 27 1 3.0029 2.1801 3.0770 28 1 5.7576 0.2079 1.2743 29 1 4.9850 0.2270 2.8778 30 1 6.2177 -3.2251 2.5256 31 1 3.9689 2.0266 -0.5979 32 1 3.8669 0.2543 -0.4027 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307515050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:52 Heat of formation + Delta-G solvation = -63.068018 kcal Electronic energy + Delta-G solvation = -13764.147419 eV Core-core repulsion = 11530.918616 eV Total energy + Delta-G solvation = -2233.228803 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.73743 -37.60114 -34.85139 -32.74996 -30.70861 -28.62068 -27.76108 -26.30169 -24.21198 -21.59723 -20.85445 -18.59342 -17.70718 -16.67009 -16.29655 -16.12487 -15.47858 -15.23183 -14.53140 -14.19282 -13.95371 -13.78060 -13.10762 -12.96960 -12.79624 -12.54228 -12.44492 -12.29936 -12.08762 -11.96951 -11.78181 -11.46905 -11.12354 -10.56383 -10.33449 -9.04894 -8.11150 -6.25782 1.35782 1.38557 1.47074 2.41353 2.92575 3.14651 3.47624 3.68559 3.92377 4.06282 4.45404 4.49536 4.55343 4.60380 4.77061 4.79745 4.90034 4.98956 5.01925 5.04099 5.12567 5.25435 5.27131 5.34676 5.47444 5.83149 6.08939 6.33808 6.42151 6.54551 6.99272 7.44139 8.93191 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036151 B = 0.013755 C = 0.011268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.345510 B = 2035.158369 C = 2484.363959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.398 6.398 3 C 0.091 3.909 4 C -0.159 4.159 5 C -0.138 4.138 6 C 0.046 3.954 7 N -0.536 5.536 8 C 0.193 3.807 9 C -0.551 4.551 10 H 0.086 0.914 11 C 0.005 3.995 12 N -0.934 5.934 13 Si 0.956 3.044 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.054 3.946 18 H 0.081 0.919 19 H 0.049 0.951 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.000 1.000 29 H -0.001 1.001 30 H 0.262 0.738 31 H 0.090 0.910 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 8.067 -5.430 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.318 6.318 3 C 0.051 3.949 4 C -0.217 4.217 5 C -0.176 4.176 6 C -0.082 4.082 7 N -0.260 5.260 8 C 0.066 3.934 9 C -0.590 4.590 10 H 0.104 0.896 11 C -0.193 4.193 12 N -0.575 5.575 13 Si 0.782 3.218 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.074 4.074 18 H 0.099 0.901 19 H 0.067 0.933 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.274 8.225 -5.307 14.931 hybrid contribution -0.466 -1.765 0.106 1.829 sum -11.741 6.460 -5.201 14.374 Atomic orbital electron populations 1.22935 0.80763 1.02916 1.01065 1.88090 1.20716 1.28013 1.94954 1.22866 0.93258 0.83201 0.95568 1.22205 1.02381 1.00497 0.96576 1.23289 0.98513 1.01029 0.94800 1.22885 0.89921 0.98852 0.96568 1.63953 1.18989 1.40372 1.02646 1.19566 0.92660 0.87015 0.94146 1.22436 1.05397 0.92092 1.39073 0.89585 1.25839 0.95666 1.02605 0.95187 1.70089 1.17433 1.26009 1.43998 0.85631 0.78561 0.78811 0.78790 1.19714 1.20948 1.19676 1.22839 0.92315 1.01121 0.91151 0.90063 0.93252 0.91904 0.92103 0.90455 0.89721 0.89705 0.88097 0.95630 0.90833 0.98137 0.98276 0.92968 0.89167 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.36 113.37 1.17 1.68 16 2 O -0.40 -14.94 8.47 -148.98 -1.26 -16.20 16 3 C 0.09 2.99 0.89 -9.51 -0.01 2.98 16 4 C -0.16 -3.73 8.25 71.98 0.59 -3.13 16 5 C -0.14 -4.15 6.10 32.08 0.20 -3.96 16 6 C 0.05 1.82 6.45 86.77 0.56 2.38 16 7 N -0.54 -24.43 5.41 -890.06 -4.82 -29.25 16 8 C 0.19 10.84 5.11 85.56 0.44 11.27 16 9 C -0.55 -32.14 6.76 25.60 0.17 -31.97 16 10 H 0.09 4.92 4.82 -2.91 -0.01 4.90 16 11 C 0.00 0.30 5.46 84.65 0.46 0.76 16 12 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 13 Si 0.96 46.71 29.54 68.60 2.03 48.73 16 14 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 16 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 17 C 0.05 2.19 5.56 86.65 0.48 2.67 16 18 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 19 H 0.05 1.18 6.41 -2.39 -0.02 1.17 16 20 H 0.06 1.33 6.39 -2.39 -0.02 1.31 16 21 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 22 H 0.08 1.48 6.45 -2.39 -0.02 1.47 16 23 H 0.08 1.69 8.11 -2.39 -0.02 1.67 16 24 H 0.08 2.25 6.32 -2.39 -0.02 2.24 16 25 H 0.10 2.50 8.03 -2.39 -0.02 2.49 16 26 H 0.03 1.18 7.05 -2.39 -0.02 1.17 16 27 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.00 -0.06 8.08 -2.39 -0.02 -0.08 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.09 3.18 7.82 -2.39 -0.02 3.16 16 32 H 0.05 2.26 6.20 -2.39 -0.01 2.24 16 Total: -1.00 -68.08 249.52 1.39 -66.69 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.09 Total: 5.42 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.07 Total: -17.32 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -4.53 Total: -87.32 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.26 Total: -16.20 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -68.08 1.39 -66.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307515050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.624 kcal (2) G-P(sol) polarization free energy of solvation -68.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds