Wall clock time and date at job start Mon Mar 30 2020 02:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.06616 * 2 1 4 4 C 1.53996 * 109.91601 * 238.79492 * 2 1 3 5 5 H 1.09002 * 110.30876 * 358.34110 * 4 2 1 6 6 O 1.42901 * 110.39315 * 120.45908 * 4 2 1 7 7 C 1.54593 * 105.14288 * 239.41969 * 4 2 1 8 8 C 1.54941 * 102.92047 * 338.04633 * 7 4 2 9 9 N 1.47901 * 109.91846 * 121.20704 * 2 1 3 10 10 C 1.46898 * 111.00042 * 265.19358 * 9 2 1 11 11 C 1.50694 * 109.47375 * 177.15267 * 10 9 2 12 12 H 1.08001 * 119.99996 * 358.28465 * 11 10 9 13 13 C 1.37878 * 120.00016 * 178.27695 * 11 10 9 14 14 N 1.31511 * 120.00187 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99877 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47080 * 90.00120 * 15 13 11 17 17 H 1.48501 * 109.47224 * 210.00122 * 15 13 11 18 18 H 1.48503 * 109.47120 * 330.00057 * 15 13 11 19 19 H 1.09001 * 109.46817 * 298.79343 * 1 2 3 20 20 H 1.08994 * 109.47334 * 58.79184 * 1 2 3 21 21 H 1.08997 * 109.47256 * 178.79705 * 1 2 3 22 22 H 1.09000 * 109.46907 * 175.94053 * 3 2 1 23 23 H 1.08999 * 109.46930 * 295.93690 * 3 2 1 24 24 H 1.08999 * 109.47444 * 55.93775 * 3 2 1 25 25 H 0.96704 * 114.00343 * 177.21995 * 6 4 2 26 26 H 1.08992 * 110.72596 * 219.67997 * 7 4 2 27 27 H 1.09002 * 110.87498 * 96.47212 * 7 4 2 28 28 H 1.09003 * 110.65969 * 278.97627 * 8 7 4 29 29 H 1.08997 * 110.81001 * 155.91322 * 8 7 4 30 30 H 1.09009 * 109.46967 * 57.15201 * 10 9 2 31 31 H 1.09005 * 109.47245 * 297.15748 * 10 9 2 32 32 H 0.96998 * 119.99955 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0546 -0.7501 -1.2384 5 1 1.2227 -1.1401 -1.8250 6 8 2.8626 0.1147 -2.0392 7 6 2.9059 -1.9117 -0.6763 8 6 3.2681 -1.4185 0.7471 9 7 2.0339 -0.7205 1.1893 10 6 2.3213 0.2122 2.2872 11 6 2.7647 -0.5625 3.5014 12 1 2.8002 -1.6414 3.4702 13 6 3.1251 0.1062 4.6520 14 7 3.0815 1.4201 4.6902 15 14 3.6755 -0.8540 6.1569 16 1 5.1464 -1.0514 6.1074 17 1 3.3185 -0.0982 7.3843 18 1 2.9989 -2.1759 6.1752 19 1 -0.3633 0.4950 0.9006 20 1 -0.3634 0.5324 -0.8789 21 1 -0.3633 -1.0274 -0.0216 22 1 3.1425 1.4267 0.0728 23 1 1.7574 1.9326 -0.9242 24 1 1.6390 1.9759 0.8513 25 1 3.2549 -0.3164 -2.8108 26 1 3.8051 -2.0558 -1.2752 27 1 2.3241 -2.8322 -0.6292 28 1 4.1098 -0.7267 0.7119 29 1 3.4905 -2.2598 1.4035 30 1 1.4218 0.7796 2.5268 31 1 3.1131 0.8973 1.9842 32 1 2.7961 1.9187 3.9086 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307579936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:04 Heat of formation + Delta-G solvation = -51.908798 kcal Electronic energy + Delta-G solvation = -13652.470044 eV Core-core repulsion = 11419.725141 eV Total energy + Delta-G solvation = -2232.744903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.49220 -35.69790 -33.11260 -31.86069 -30.16103 -26.74005 -25.55364 -24.44914 -22.57231 -20.69900 -18.18756 -16.96530 -16.50793 -15.43146 -14.97909 -14.15381 -13.70062 -13.29495 -13.08971 -12.50362 -12.22469 -11.99979 -11.88920 -11.52658 -11.11125 -10.91754 -10.85801 -10.65953 -10.39978 -10.21984 -10.07822 -9.90157 -9.64976 -8.57945 -8.34352 -7.37771 -6.33575 -4.01687 3.45259 3.49719 3.65552 4.33502 4.56124 4.78295 5.00122 5.21574 5.31066 5.42994 5.64144 5.68837 5.88893 5.96549 6.00886 6.12256 6.28811 6.37611 6.46684 6.53560 6.59285 6.68859 6.81770 7.03235 7.17566 7.70156 7.84265 8.00556 8.35070 8.61867 8.91125 9.69201 11.06048 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051249 B = 0.010165 C = 0.009521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.217420 B = 2753.843489 C = 2940.313854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.088 3.912 3 C -0.146 4.146 4 C 0.101 3.899 5 H 0.059 0.941 6 O -0.560 6.560 7 C -0.159 4.159 8 C 0.056 3.944 9 N -0.500 5.500 10 C 0.175 3.825 11 C -0.589 4.589 12 H 0.055 0.945 13 C 0.013 3.987 14 N -0.915 5.915 15 Si 1.074 2.926 16 H -0.289 1.289 17 H -0.285 1.285 18 H -0.288 1.288 19 H 0.060 0.940 20 H 0.049 0.951 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.369 0.631 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.020 0.980 31 H -0.009 1.009 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 -4.532 -11.537 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.002 4.002 3 C -0.204 4.204 4 C 0.041 3.959 5 H 0.076 0.924 6 O -0.364 6.364 7 C -0.197 4.197 8 C -0.072 4.072 9 N -0.224 5.224 10 C 0.049 3.951 11 C -0.628 4.628 12 H 0.073 0.927 13 C -0.190 4.190 14 N -0.552 5.552 15 Si 0.903 3.097 16 H -0.216 1.216 17 H -0.210 1.210 18 H -0.214 1.214 19 H 0.079 0.921 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.215 0.785 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.009 0.991 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.659 -4.292 -9.293 10.370 hybrid contribution 0.274 0.005 -2.263 2.279 sum -1.384 -4.288 -11.555 12.403 Atomic orbital electron populations 1.21683 0.93687 1.01630 1.01132 1.21812 0.95453 0.93297 0.89637 1.21998 1.01410 0.96212 1.00821 1.22715 0.91919 0.89547 0.91673 0.92357 1.86610 1.68524 1.39917 1.41370 1.23251 0.99630 0.98500 0.98303 1.22908 0.92571 0.98592 0.93136 1.64942 1.26061 1.27048 1.04367 1.20001 0.94800 0.91331 0.88957 1.22016 1.48048 0.94810 0.97891 0.92665 1.25835 0.95046 0.96742 1.01382 1.70757 1.45051 1.06386 1.32999 0.83469 0.76249 0.74640 0.75371 1.21589 1.21036 1.21418 0.92139 0.93227 0.92405 0.92641 0.92928 0.92590 0.78508 0.91381 0.90663 0.94347 0.90325 0.96247 0.99119 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 8.63 37.16 0.32 -1.77 16 2 C 0.09 1.67 0.89 -130.53 -0.12 1.55 16 3 C -0.15 -2.87 6.26 37.16 0.23 -2.64 16 4 C 0.10 1.58 3.96 -25.37 -0.10 1.48 16 5 H 0.06 0.80 7.69 -51.93 -0.40 0.41 16 6 O -0.56 -8.26 11.49 -35.23 -0.40 -8.66 16 7 C -0.16 -2.46 6.80 -24.87 -0.17 -2.62 16 8 C 0.06 1.14 5.89 -1.89 -0.01 1.13 16 9 N -0.50 -11.22 4.91 -216.41 -1.06 -12.28 16 10 C 0.18 4.65 2.72 -4.98 -0.01 4.64 16 11 C -0.59 -17.11 8.70 -34.44 -0.30 -17.41 16 12 H 0.06 1.61 7.36 -52.49 -0.39 1.22 16 13 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 14 N -0.92 -28.42 13.65 55.43 0.76 -27.67 16 15 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 19 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 1.18 7.30 -51.93 -0.38 0.80 16 23 H 0.05 0.93 7.73 -51.93 -0.40 0.53 16 24 H 0.06 1.16 6.83 -51.93 -0.35 0.81 16 25 H 0.37 3.59 9.10 45.56 0.41 4.01 16 26 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.84 7.92 -51.93 -0.41 0.43 16 29 H 0.08 1.64 7.72 -51.93 -0.40 1.24 16 30 H 0.02 0.55 7.54 -51.92 -0.39 0.16 16 31 H -0.01 -0.25 6.15 -51.93 -0.32 -0.57 16 32 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 LS Contribution 253.79 15.07 3.82 3.82 Total: -1.00 -32.16 253.79 -6.45 -38.62 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.23 Total: 0.74 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.25 Total: -15.34 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.31 Total: -39.95 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.40 Total: -8.66 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.16 -6.45 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307579936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.292 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds