Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46899 * 109.47037 * 60.00153 * 4 2 1 6 6 C 1.46896 * 111.00272 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47203 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00460 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99802 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99809 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00102 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46979 * 89.99955 * 11 9 7 13 13 H 1.48503 * 109.47258 * 209.99923 * 11 9 7 14 14 H 1.48500 * 109.47325 * 330.00258 * 11 9 7 15 15 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 16 16 C 1.53001 * 117.51964 * 231.28841 * 15 2 1 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 2 18 18 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 19 19 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 20 20 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 21 21 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 23 23 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 24 24 H 1.00900 * 111.00520 * 56.04391 * 5 4 2 25 25 H 1.09006 * 109.47009 * 299.99660 * 6 5 4 26 26 H 1.08997 * 109.47556 * 59.99733 * 6 5 4 27 27 H 0.97006 * 120.00127 * 180.02562 * 10 9 7 28 28 H 1.09002 * 115.54973 * 85.58625 * 15 2 1 29 29 H 1.09001 * 117.49733 * 214.97413 * 16 15 2 30 30 H 1.08995 * 117.49577 * 359.97438 * 16 15 2 31 31 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 32 32 H 1.09004 * 117.51638 * 107.47550 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5505 -0.0288 -2.4486 6 6 2.0211 -0.6952 -3.6702 7 6 1.4995 0.0414 -4.8771 8 1 0.8800 0.9168 -4.7494 9 6 1.8132 -0.4023 -6.1443 10 7 1.3585 0.2408 -7.1974 11 14 2.8852 -1.9160 -6.3652 12 1 2.0267 -3.1264 -6.4232 13 1 3.6574 -1.7958 -7.6280 14 1 3.8238 -2.0293 -5.2199 15 6 2.0400 -0.7212 1.2493 16 6 3.0757 0.0040 2.1109 17 6 1.6373 -0.1482 2.6097 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 2.9702 1.4238 0.0004 22 1 3.1301 -0.7208 -1.2493 23 1 1.6767 -1.7489 -1.2492 24 1 1.8198 0.9435 -2.4402 25 1 3.1110 -0.6954 -3.6872 26 1 1.6573 -1.7226 -3.6869 27 1 1.5788 -0.0716 -8.0890 28 1 2.1253 -1.8046 1.1648 29 1 3.8425 -0.6023 2.5932 30 1 3.3942 0.9949 1.7876 31 1 1.0093 0.7428 2.6145 32 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307958486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = -31.168410 kcal Electronic energy + Delta-G solvation = -12922.025864 eV Core-core repulsion = 10690.180332 eV Total energy + Delta-G solvation = -2231.845532 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.27045 -35.61489 -34.44288 -32.42450 -30.74085 -27.54703 -25.17101 -22.40997 -22.27090 -20.95044 -19.74936 -17.04431 -16.69511 -15.78859 -15.15430 -14.50227 -14.12014 -13.49469 -13.29690 -12.80755 -12.47223 -12.04111 -11.88549 -11.68487 -11.52968 -11.26105 -10.85017 -10.72016 -10.58412 -10.54495 -10.00916 -9.96462 -9.52309 -9.21517 -8.58038 -7.42443 -6.04725 -4.02499 3.28704 3.35685 3.37906 3.70997 4.32076 4.42473 4.61776 4.87623 4.89566 5.13041 5.27921 5.36574 5.44831 5.54630 5.61800 5.78453 5.98234 6.03477 6.05256 6.10813 6.26883 6.32724 6.69616 6.77815 7.03059 7.61650 7.81275 7.91489 8.39496 8.66914 9.04253 9.57211 11.08644 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.064300 B = 0.007258 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.352933 B = 3856.638338 C = 4032.515090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.163 3.837 3 O -0.554 6.554 4 C 0.036 3.964 5 N -0.673 5.673 6 C 0.164 3.836 7 C -0.515 4.515 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.878 3.122 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.269 1.269 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.168 4.168 18 H 0.049 0.951 19 H 0.080 0.920 20 H 0.064 0.936 21 H 0.369 0.631 22 H 0.019 0.981 23 H 0.071 0.929 24 H 0.341 0.659 25 H -0.018 1.018 26 H 0.020 0.980 27 H 0.263 0.737 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 -2.428 17.096 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 O -0.360 6.360 4 C -0.094 4.094 5 N -0.305 5.305 6 C 0.036 3.964 7 C -0.553 4.553 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.539 5.539 11 Si 0.705 3.295 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.200 4.200 16 C -0.218 4.218 17 C -0.205 4.205 18 H 0.068 0.932 19 H 0.099 0.901 20 H 0.082 0.918 21 H 0.216 0.784 22 H 0.037 0.963 23 H 0.089 0.911 24 H 0.160 0.840 25 H 0.000 1.000 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.856 -2.630 16.880 17.185 hybrid contribution 2.189 -0.874 -0.267 2.372 sum 4.045 -3.504 16.614 17.454 Atomic orbital electron populations 1.21561 0.91717 1.02080 1.02751 1.20779 0.95404 0.81071 0.90544 1.86585 1.26085 1.26552 1.96777 1.22526 0.96357 0.98901 0.91657 1.60382 1.63103 1.06353 1.00638 1.20002 0.92712 0.95272 0.88414 1.21073 1.31878 1.13824 0.88543 0.90236 1.24911 0.95767 0.96812 0.95880 1.69902 1.45652 1.40282 0.98106 0.86819 0.81142 0.83859 0.77637 1.20163 1.21202 1.19371 1.23127 1.04376 0.99770 0.92757 1.22946 0.92581 1.02230 1.04070 1.22856 0.97895 1.03220 0.96576 0.93161 0.90062 0.91752 0.78366 0.96298 0.91075 0.84045 1.00049 0.96162 0.92663 0.87502 0.89154 0.88356 0.88432 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.53 37.16 0.32 -1.49 16 2 C 0.16 2.31 0.98 -90.62 -0.09 2.22 16 3 O -0.55 -7.98 11.47 -35.23 -0.40 -8.38 16 4 C 0.04 0.61 4.82 -3.83 -0.02 0.59 16 5 N -0.67 -14.21 5.72 -115.06 -0.66 -14.87 16 6 C 0.16 4.06 4.51 -4.98 -0.02 4.04 16 7 C -0.51 -15.03 9.87 -34.44 -0.34 -15.37 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 11 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 15 C -0.18 -2.12 5.15 -90.61 -0.47 -2.58 16 16 C -0.18 -1.83 9.74 -26.73 -0.26 -2.09 16 17 C -0.17 -1.75 9.67 -26.73 -0.26 -2.01 16 18 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 19 H 0.08 1.38 7.60 -51.93 -0.39 0.99 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.37 4.27 7.56 45.56 0.34 4.61 16 22 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.34 7.22 8.11 -39.29 -0.32 6.90 16 25 H -0.02 -0.45 7.20 -51.93 -0.37 -0.82 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.11 1.20 8.11 -51.93 -0.42 0.78 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.96 6.38 -51.93 -0.33 0.63 16 31 H 0.10 1.08 7.61 -51.93 -0.40 0.68 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -31.14 262.62 -6.60 -37.75 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.37 Total: 6.41 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.24 Total: -14.79 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.11 Total: -42.12 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.40 Total: -8.38 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.14 -6.60 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307958486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.578 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds