Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46899 * 109.47037 * 60.00153 * 4 2 1 6 6 C 1.46896 * 111.00272 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47203 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00460 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99802 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99809 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00102 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46979 * 89.99955 * 11 9 7 13 13 H 1.48503 * 109.47258 * 209.99923 * 11 9 7 14 14 H 1.48500 * 109.47325 * 330.00258 * 11 9 7 15 15 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 16 16 C 1.53001 * 117.51964 * 231.28841 * 15 2 1 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 2 18 18 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 19 19 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 20 20 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 21 21 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 23 23 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 24 24 H 1.00900 * 111.00520 * 56.04391 * 5 4 2 25 25 H 1.09006 * 109.47009 * 299.99660 * 6 5 4 26 26 H 1.08997 * 109.47556 * 59.99733 * 6 5 4 27 27 H 0.97006 * 120.00127 * 180.02562 * 10 9 7 28 28 H 1.09002 * 115.54973 * 85.58625 * 15 2 1 29 29 H 1.09001 * 117.49733 * 214.97413 * 16 15 2 30 30 H 1.08995 * 117.49577 * 359.97438 * 16 15 2 31 31 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 32 32 H 1.09004 * 117.51638 * 107.47550 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5505 -0.0288 -2.4486 6 6 2.0211 -0.6952 -3.6702 7 6 1.4995 0.0414 -4.8771 8 1 0.8800 0.9168 -4.7494 9 6 1.8132 -0.4023 -6.1443 10 7 1.3585 0.2408 -7.1974 11 14 2.8852 -1.9160 -6.3652 12 1 2.0267 -3.1264 -6.4232 13 1 3.6574 -1.7958 -7.6280 14 1 3.8238 -2.0293 -5.2199 15 6 2.0400 -0.7212 1.2493 16 6 3.0757 0.0040 2.1109 17 6 1.6373 -0.1482 2.6097 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 2.9702 1.4238 0.0004 22 1 3.1301 -0.7208 -1.2493 23 1 1.6767 -1.7489 -1.2492 24 1 1.8198 0.9435 -2.4402 25 1 3.1110 -0.6954 -3.6872 26 1 1.6573 -1.7226 -3.6869 27 1 1.5788 -0.0716 -8.0890 28 1 2.1253 -1.8046 1.1648 29 1 3.8425 -0.6023 2.5932 30 1 3.3942 0.9949 1.7876 31 1 1.0093 0.7428 2.6145 32 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307958486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = -54.829834 kcal Electronic energy + Delta-G solvation = -12923.051901 eV Core-core repulsion = 10690.180332 eV Total energy + Delta-G solvation = -2232.871569 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33825 -36.99976 -35.75212 -34.47552 -32.14665 -29.35836 -26.61559 -23.81337 -23.11971 -22.67913 -20.82893 -19.05563 -17.82066 -17.20686 -16.50060 -16.15041 -15.61502 -15.02201 -14.75790 -14.47435 -13.89899 -13.48091 -13.21027 -13.08188 -12.79379 -12.62281 -12.45112 -12.22551 -11.88920 -11.85531 -11.55519 -11.39000 -10.95141 -10.82133 -10.63598 -9.11075 -8.31351 -6.36369 1.33723 1.35614 1.46620 2.32839 2.86917 3.02352 3.20553 3.54537 3.86364 3.95349 4.06619 4.21807 4.33891 4.45836 4.67111 4.75789 4.80825 4.88328 4.98597 5.01753 5.06757 5.16539 5.27727 5.31929 5.48525 5.50656 5.93810 6.55148 6.64137 6.74263 6.85225 7.28724 8.85639 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.064300 B = 0.007258 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.352933 B = 3856.638338 C = 4032.515090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.169 3.831 3 O -0.567 6.567 4 C 0.036 3.964 5 N -0.682 5.682 6 C 0.175 3.825 7 C -0.530 4.530 8 H 0.034 0.966 9 C 0.007 3.993 10 N -0.948 5.948 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.251 1.251 15 C -0.191 4.191 16 C -0.173 4.173 17 C -0.164 4.164 18 H 0.062 0.938 19 H 0.049 0.951 20 H 0.072 0.928 21 H 0.381 0.619 22 H 0.029 0.971 23 H 0.075 0.925 24 H 0.338 0.662 25 H -0.014 1.014 26 H 0.024 0.976 27 H 0.268 0.732 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 -4.109 18.823 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 O -0.375 6.375 4 C -0.094 4.094 5 N -0.313 5.313 6 C 0.047 3.953 7 C -0.569 4.569 8 H 0.053 0.947 9 C -0.191 4.191 10 N -0.588 5.588 11 Si 0.778 3.222 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.175 1.175 15 C -0.210 4.210 16 C -0.209 4.209 17 C -0.201 4.201 18 H 0.081 0.919 19 H 0.068 0.932 20 H 0.091 0.909 21 H 0.230 0.770 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.156 0.844 25 H 0.003 0.997 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.306 -4.304 18.639 19.413 hybrid contribution 1.672 -0.244 -0.774 1.858 sum 4.978 -4.549 17.865 19.095 Atomic orbital electron populations 1.21550 0.92436 1.02359 1.01762 1.20650 0.94909 0.81008 0.90626 1.86565 1.27367 1.26773 1.96790 1.22651 0.96964 0.98957 0.90817 1.60273 1.63694 1.06308 1.01066 1.19752 0.92506 0.94848 0.88242 1.21351 1.31540 1.13055 0.90921 0.94746 1.25922 0.97299 1.00587 0.95269 1.70061 1.47369 1.42510 0.98880 0.85610 0.79282 0.79083 0.78271 1.18966 1.20496 1.17458 1.22963 1.06121 0.99946 0.91940 1.23052 0.92733 1.02269 1.02889 1.22910 0.98058 1.03054 0.96047 0.91948 0.93187 0.90886 0.76983 0.95291 0.90687 0.84424 0.99671 0.95804 0.92295 0.86717 0.87534 0.88218 0.89290 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.52 8.53 71.98 0.61 -2.91 16 2 C 0.17 4.53 0.98 -10.79 -0.01 4.52 16 3 O -0.57 -15.62 11.47 -148.98 -1.71 -17.33 16 4 C 0.04 1.15 4.82 86.30 0.42 1.57 16 5 N -0.68 -28.69 5.72 -517.95 -2.96 -31.65 16 6 C 0.18 8.57 4.51 85.56 0.39 8.95 16 7 C -0.53 -31.66 9.87 25.60 0.25 -31.41 16 8 H 0.03 2.29 8.06 -2.91 -0.02 2.27 16 9 C 0.01 0.40 5.47 84.66 0.46 0.86 16 10 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 11 Si 0.95 44.53 27.47 68.60 1.88 46.42 16 12 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 15 C -0.19 -3.93 5.15 -10.79 -0.06 -3.99 16 16 C -0.17 -2.94 9.74 30.59 0.30 -2.64 16 17 C -0.16 -2.93 9.67 30.60 0.30 -2.64 16 18 H 0.06 1.59 7.29 -2.39 -0.02 1.57 16 19 H 0.05 1.72 7.60 -2.39 -0.02 1.70 16 20 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 21 H 0.38 8.18 7.56 -74.06 -0.56 7.62 16 22 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.34 14.49 8.11 -89.69 -0.73 13.76 16 25 H -0.01 -0.69 7.20 -2.38 -0.02 -0.70 16 26 H 0.02 1.15 7.57 -2.39 -0.02 1.14 16 27 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 28 H 0.11 2.21 8.11 -2.39 -0.02 2.19 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.67 6.38 -2.39 -0.02 1.66 16 31 H 0.09 1.76 7.61 -2.39 -0.02 1.75 16 32 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -67.41 262.62 -0.07 -67.48 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.24 Total: 22.73 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 2.66 Total: -27.69 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.67 Total: -91.61 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -1.71 Total: -17.33 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -67.41 -0.07 -67.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307958486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.654 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds