Wall clock time and date at job start Mon Mar 30 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99883 * 179.97438 * 11 10 9 13 13 H 1.08994 * 110.01900 * 34.29612 * 12 11 10 14 14 C 1.54265 * 110.03360 * 272.90341 * 12 11 10 15 15 C 1.54964 * 104.16447 * 217.14002 * 14 12 11 16 16 C 1.54888 * 102.77457 * 37.88605 * 15 14 12 17 17 C 1.53878 * 110.02967 * 155.68944 * 12 11 10 18 18 H 1.08996 * 110.03235 * 238.56474 * 17 12 11 19 19 O 1.42898 * 110.03542 * 0.02562 * 17 12 11 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 22 22 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 23 23 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 24 24 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 25 25 H 1.00901 * 111.00018 * 56.04383 * 11 10 9 26 26 H 1.09004 * 110.49031 * 335.79022 * 14 12 11 27 27 H 1.08997 * 110.48421 * 98.42823 * 14 12 11 28 28 H 1.09003 * 110.71929 * 279.57528 * 15 14 12 29 29 H 1.08996 * 110.92479 * 156.29853 * 15 14 12 30 30 H 1.09001 * 110.48851 * 203.40478 * 16 15 14 31 31 H 1.09007 * 110.59609 * 80.82221 * 16 15 14 32 32 H 0.96696 * 114.00027 * 179.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4353 -6.0758 -0.0018 13 1 3.3276 -5.8337 0.5753 14 6 2.8248 -6.4396 -1.4494 15 6 2.9086 -7.9869 -1.4422 16 6 1.7353 -8.3891 -0.5144 17 6 1.7431 -7.3149 0.5928 18 1 2.3001 -7.6746 1.4579 19 8 0.4033 -6.9929 0.9711 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6240 -2.5567 -0.8903 23 1 2.8719 -3.6043 -0.8906 24 1 2.8720 -3.6043 0.8894 25 1 0.8746 -4.9841 -0.7827 26 1 2.0581 -6.1025 -2.1471 27 1 3.7916 -6.0056 -1.7048 28 1 3.8603 -8.3197 -1.0278 29 1 2.7637 -8.3893 -2.4448 30 1 1.9074 -9.3775 -0.0883 31 1 0.7913 -8.3687 -1.0591 32 1 -0.0865 -7.7341 1.3529 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323824963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:04 Heat of formation + Delta-G solvation = -64.867584 kcal Electronic energy + Delta-G solvation = -12810.699200 eV Core-core repulsion = 10577.392362 eV Total energy + Delta-G solvation = -2233.306838 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.90599 -35.34309 -34.21649 -32.54920 -29.43529 -27.52536 -26.25559 -23.56762 -20.89723 -20.54126 -19.66033 -17.20369 -16.17186 -15.80233 -14.69054 -14.41928 -14.15763 -13.77399 -13.41107 -12.76651 -12.33957 -12.21011 -11.83621 -11.16410 -11.13548 -10.97674 -10.85163 -10.78469 -10.63473 -10.39608 -9.89809 -9.63431 -9.25339 -9.07410 -8.28526 -7.52601 -5.93105 -3.95627 3.37247 3.41279 3.43790 4.35446 4.50808 4.62486 4.65868 4.94929 5.14511 5.33645 5.42305 5.51026 5.54143 5.60934 5.78788 5.89116 5.95508 6.09059 6.24661 6.33454 6.46050 6.52125 7.08504 7.60434 7.82055 7.91842 8.00853 8.16238 8.21703 8.52078 9.11901 9.67504 11.18353 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068076 B = 0.006556 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.206202 B = 4269.938043 C = 4505.614017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.664 5.664 12 C 0.088 3.912 13 H 0.080 0.920 14 C -0.154 4.154 15 C -0.120 4.120 16 C -0.160 4.160 17 C 0.108 3.892 18 H 0.052 0.948 19 O -0.533 6.533 20 H 0.261 0.739 21 H 0.026 0.974 22 H 0.013 0.987 23 H 0.011 0.989 24 H 0.055 0.945 25 H 0.339 0.661 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -16.030 -1.297 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.294 5.294 12 C -0.023 4.023 13 H 0.098 0.902 14 C -0.194 4.194 15 C -0.158 4.158 16 C -0.198 4.198 17 C 0.048 3.952 18 H 0.069 0.931 19 O -0.335 6.335 20 H 0.070 0.930 21 H 0.044 0.956 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.157 0.843 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.313 -15.291 -0.826 15.909 hybrid contribution 0.727 0.357 -0.760 1.111 sum 5.040 -14.933 -1.587 15.840 Atomic orbital electron populations 1.69971 1.06021 1.26604 1.50679 1.25006 0.94833 0.99151 0.95394 0.86654 0.79556 0.83202 0.78534 1.20344 1.21278 1.20258 1.21167 0.92902 0.91133 1.50822 0.92893 1.19050 0.94032 0.90339 0.97724 1.22201 0.96951 0.88987 0.98184 1.60396 1.18203 1.00766 1.50058 1.22237 0.94876 0.91210 0.93988 0.90183 1.23198 1.01982 0.95772 0.98420 1.22343 0.98091 0.95963 0.99388 1.23175 0.99734 0.98697 0.98219 1.22484 0.84452 0.93726 0.94586 0.93052 1.86846 1.24289 1.38714 1.83623 0.92983 0.95604 0.96895 0.97027 0.92672 0.84272 0.91208 0.91541 0.91569 0.91700 0.91891 0.90660 0.79439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.71 5.23 -27.88 -0.15 0.57 16 10 C 0.06 1.45 5.45 -3.83 -0.02 1.43 16 11 N -0.66 -12.95 5.28 -105.55 -0.56 -13.51 16 12 C 0.09 1.37 3.23 -66.59 -0.21 1.15 16 13 H 0.08 1.24 7.82 -51.93 -0.41 0.84 16 14 C -0.15 -2.04 6.43 -25.03 -0.16 -2.20 16 15 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 16 C -0.16 -1.69 6.56 -25.07 -0.16 -1.85 16 17 C 0.11 1.41 4.26 -25.61 -0.11 1.31 16 18 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 19 O -0.53 -7.84 12.27 -35.23 -0.43 -8.27 16 20 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 24 H 0.05 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.34 6.62 8.12 -39.29 -0.32 6.30 16 26 H 0.07 0.98 7.57 -51.93 -0.39 0.59 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.36 3.55 9.11 45.56 0.42 3.97 16 LS Contribution 264.26 15.07 3.98 3.98 Total: -1.00 -32.34 264.26 -7.15 -39.49 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.46 Total: 3.23 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.40 Total: -15.08 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.18 Total: -40.51 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.43 Total: -8.27 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.34 -7.15 -39.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323824963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.379 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds