Wall clock time and date at job start Mon Mar 30 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99883 * 179.97438 * 11 10 9 13 13 H 1.08994 * 110.01900 * 34.29612 * 12 11 10 14 14 C 1.54265 * 110.03360 * 272.90341 * 12 11 10 15 15 C 1.54964 * 104.16447 * 217.14002 * 14 12 11 16 16 C 1.54888 * 102.77457 * 37.88605 * 15 14 12 17 17 C 1.53878 * 110.02967 * 155.68944 * 12 11 10 18 18 H 1.08996 * 110.03235 * 238.56474 * 17 12 11 19 19 O 1.42898 * 110.03542 * 0.02562 * 17 12 11 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 22 22 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 23 23 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 24 24 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 25 25 H 1.00901 * 111.00018 * 56.04383 * 11 10 9 26 26 H 1.09004 * 110.49031 * 335.79022 * 14 12 11 27 27 H 1.08997 * 110.48421 * 98.42823 * 14 12 11 28 28 H 1.09003 * 110.71929 * 279.57528 * 15 14 12 29 29 H 1.08996 * 110.92479 * 156.29853 * 15 14 12 30 30 H 1.09001 * 110.48851 * 203.40478 * 16 15 14 31 31 H 1.09007 * 110.59609 * 80.82221 * 16 15 14 32 32 H 0.96696 * 114.00027 * 179.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4353 -6.0758 -0.0018 13 1 3.3276 -5.8337 0.5753 14 6 2.8248 -6.4396 -1.4494 15 6 2.9086 -7.9869 -1.4422 16 6 1.7353 -8.3891 -0.5144 17 6 1.7431 -7.3149 0.5928 18 1 2.3001 -7.6746 1.4579 19 8 0.4033 -6.9929 0.9711 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6240 -2.5567 -0.8903 23 1 2.8719 -3.6043 -0.8906 24 1 2.8720 -3.6043 0.8894 25 1 0.8746 -4.9841 -0.7827 26 1 2.0581 -6.1025 -2.1471 27 1 3.7916 -6.0056 -1.7048 28 1 3.8603 -8.3197 -1.0278 29 1 2.7637 -8.3893 -2.4448 30 1 1.9074 -9.3775 -0.0883 31 1 0.7913 -8.3687 -1.0591 32 1 -0.0865 -7.7341 1.3529 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323824963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:04 Heat of formation + Delta-G solvation = -89.295898 kcal Electronic energy + Delta-G solvation = -12811.758491 eV Core-core repulsion = 10577.392362 eV Total energy + Delta-G solvation = -2234.366129 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01772 -36.81458 -35.64490 -34.49660 -31.28070 -28.52835 -27.78170 -25.48829 -22.50221 -21.80862 -20.85146 -18.62339 -18.10083 -17.04854 -16.43643 -15.83721 -15.63552 -14.95246 -14.86223 -14.21755 -14.12002 -13.63376 -13.22840 -12.93709 -12.82815 -12.54132 -12.12900 -12.10735 -11.95302 -11.73970 -11.58756 -11.37203 -11.09089 -10.63060 -10.56779 -9.06362 -8.20274 -6.32906 1.39509 1.43795 1.51788 2.40480 3.12422 3.21938 3.61802 3.68113 3.80985 4.14384 4.37703 4.40967 4.49599 4.55166 4.64082 4.73479 4.85289 4.98758 5.06583 5.09153 5.14064 5.24215 5.40519 5.44090 5.67321 5.79250 6.16269 6.33488 6.59709 6.84555 7.17327 7.36456 8.92035 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068076 B = 0.006556 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.206202 B = 4269.938043 C = 4505.614017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.085 3.915 11 N -0.674 5.674 12 C 0.077 3.923 13 H 0.077 0.923 14 C -0.153 4.153 15 C -0.112 4.112 16 C -0.150 4.150 17 C 0.106 3.894 18 H 0.066 0.934 19 O -0.564 6.564 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.012 1.012 23 H 0.017 0.983 24 H 0.053 0.947 25 H 0.335 0.665 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -16.866 -1.484 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.044 4.044 11 N -0.304 5.304 12 C -0.034 4.034 13 H 0.096 0.904 14 C -0.192 4.192 15 C -0.150 4.150 16 C -0.187 4.187 17 C 0.046 3.954 18 H 0.084 0.916 19 O -0.369 6.369 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.153 0.847 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.809 -16.168 -1.009 17.209 hybrid contribution 0.217 0.569 -0.679 0.913 sum 6.026 -15.599 -1.688 16.807 Atomic orbital electron populations 1.70120 1.07966 1.27936 1.51282 1.26040 0.95803 1.03568 0.94490 0.85417 0.78196 0.77656 0.79246 1.18994 1.20654 1.19092 1.21599 0.93533 0.92246 1.51201 0.92076 1.18897 0.94288 0.92498 0.94723 1.21807 0.95497 0.88863 0.98240 1.60325 1.19059 1.00845 1.50179 1.22477 0.94403 0.90651 0.95850 0.90449 1.23121 1.01446 0.98295 0.96363 1.22347 0.98915 0.93343 1.00394 1.23092 0.99496 0.99002 0.97156 1.22551 0.83815 0.93073 0.95937 0.91599 1.86779 1.25273 1.40750 1.84109 0.92685 0.99174 0.99366 0.96514 0.92836 0.84661 0.92494 0.91450 0.89929 0.90314 0.89171 0.91253 0.77133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.08 13.29 21.45 0.28 -58.79 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 45.43 29.54 68.60 2.03 47.45 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -32.68 9.11 25.60 0.23 -32.45 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.91 5.23 29.85 0.16 2.06 16 10 C 0.08 3.87 5.45 86.30 0.47 4.34 16 11 N -0.67 -26.70 5.28 -487.84 -2.57 -29.27 16 12 C 0.08 2.31 3.23 45.64 0.15 2.46 16 13 H 0.08 2.34 7.82 -2.39 -0.02 2.32 16 14 C -0.15 -3.85 6.43 31.69 0.20 -3.65 16 15 C -0.11 -2.02 6.91 31.91 0.22 -1.80 16 16 C -0.15 -2.72 6.56 31.67 0.21 -2.51 16 17 C 0.11 2.60 4.26 31.32 0.13 2.73 16 18 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 19 O -0.56 -16.13 12.27 -148.98 -1.83 -17.96 16 20 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 21 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 22 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 23 H 0.02 0.74 8.12 -2.38 -0.02 0.72 16 24 H 0.05 2.43 8.07 -2.39 -0.02 2.41 16 25 H 0.34 13.50 8.12 -89.69 -0.73 12.77 16 26 H 0.06 1.57 7.57 -2.38 -0.02 1.56 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.37 8.08 -2.38 -0.02 1.35 16 32 H 0.38 7.01 9.11 -74.06 -0.67 6.34 16 Total: -1.00 -70.21 264.26 -0.16 -70.38 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.31 Total: 16.62 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 2.23 Total: -28.43 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -2.29 Total: -88.06 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.83 Total: -17.96 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -70.21 -0.16 -70.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323824963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.918 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds