Wall clock time and date at job start Mon Mar 30 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00214 * 2 1 4 4 H 1.48503 * 109.47106 * 270.00466 * 3 2 1 5 5 H 1.48499 * 109.47161 * 29.99955 * 3 2 1 6 6 H 1.48499 * 109.47743 * 150.00168 * 3 2 1 7 7 C 1.37876 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00522 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47374 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00363 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.05653 * 325.04032 * 12 11 10 14 14 C 1.54264 * 110.03274 * 86.45144 * 12 11 10 15 15 C 1.54897 * 104.19493 * 142.89817 * 14 12 11 16 16 C 1.54889 * 102.74591 * 322.05796 * 15 14 12 17 17 C 1.53873 * 110.03463 * 203.62335 * 12 11 10 18 18 H 1.08997 * 110.07421 * 0.02562 * 17 12 11 19 19 O 1.42889 * 110.03429 * 121.42931 * 17 12 11 20 20 H 0.96998 * 119.99774 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46768 * 59.99705 * 9 7 2 22 22 H 1.08994 * 109.47160 * 300.00206 * 9 7 2 23 23 H 1.08999 * 109.47131 * 60.00161 * 10 9 7 24 24 H 1.09000 * 109.47327 * 300.00078 * 10 9 7 25 25 H 1.00907 * 111.00014 * 303.95588 * 11 10 9 26 26 H 1.08998 * 110.49036 * 24.22273 * 14 12 11 27 27 H 1.09000 * 110.49063 * 261.57314 * 14 12 11 28 28 H 1.09000 * 110.75568 * 80.37108 * 15 14 12 29 29 H 1.09002 * 110.75327 * 203.73969 * 15 14 12 30 30 H 1.08998 * 110.48466 * 156.62292 * 16 15 14 31 31 H 1.08999 * 110.48474 * 279.26336 * 16 15 14 32 32 H 0.96701 * 114.00545 * 178.62011 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 -0.0001 12 6 2.4352 -6.0759 0.0005 13 1 3.3230 -5.8383 -0.5855 14 6 2.8364 -6.4303 1.4473 15 6 2.9211 -7.9769 1.4500 16 6 1.7398 -8.3855 0.5353 17 6 1.7380 -7.3190 -0.5794 18 1 0.7137 -7.0759 -0.8619 19 8 2.4582 -7.7984 -1.7166 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.8719 -3.6044 0.8905 24 1 2.8719 -3.6044 -0.8894 25 1 0.8740 -4.9846 0.7811 26 1 2.0753 -6.0887 2.1488 27 1 3.8051 -5.9948 1.6922 28 1 3.8691 -8.3126 1.0297 29 1 2.7834 -8.3695 2.4575 30 1 1.9082 -9.3768 0.1147 31 1 0.8016 -8.3596 1.0896 32 1 2.0799 -8.5943 -2.1149 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323824990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:07 Heat of formation + Delta-G solvation = -95.599475 kcal Electronic energy + Delta-G solvation = -12729.502730 eV Core-core repulsion = 10494.863257 eV Total energy + Delta-G solvation = -2234.639473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11005 -37.06922 -35.63481 -34.45135 -31.32417 -28.67574 -27.80941 -25.49201 -22.55495 -21.89336 -20.96786 -18.57597 -17.93712 -17.06059 -16.55603 -16.43092 -15.80742 -15.00982 -14.65015 -14.25830 -13.89555 -13.58083 -13.25350 -13.11366 -12.87011 -12.70625 -12.43578 -12.06684 -11.92400 -11.74987 -11.53945 -11.38140 -11.18227 -10.75957 -10.57840 -9.28450 -8.21681 -6.33453 1.39784 1.41758 1.52738 2.39727 3.05501 3.11661 3.44758 3.68707 4.00486 4.05026 4.34815 4.39821 4.53991 4.55772 4.61566 4.74201 4.82661 4.95001 5.01845 5.03122 5.12244 5.18124 5.37185 5.43527 5.65272 5.77346 6.12548 6.25703 6.53362 6.83261 6.98079 7.35849 8.90638 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069120 B = 0.006192 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.995392 B = 4520.686936 C = 4599.395656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.087 3.913 11 N -0.691 5.691 12 C 0.082 3.918 13 H 0.065 0.935 14 C -0.150 4.150 15 C -0.113 4.113 16 C -0.147 4.147 17 C 0.107 3.893 18 H 0.060 0.940 19 O -0.583 6.583 20 H 0.265 0.735 21 H -0.007 1.007 22 H -0.005 1.005 23 H 0.021 0.979 24 H 0.050 0.950 25 H 0.342 0.658 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -16.395 2.387 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.322 5.322 12 C -0.028 4.028 13 H 0.084 0.916 14 C -0.190 4.190 15 C -0.151 4.151 16 C -0.185 4.185 17 C 0.048 3.952 18 H 0.078 0.922 19 O -0.391 6.391 20 H 0.073 0.927 21 H 0.011 0.989 22 H 0.013 0.987 23 H 0.040 0.960 24 H 0.068 0.932 25 H 0.161 0.839 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.342 -15.773 1.825 16.461 hybrid contribution 0.092 0.697 0.645 0.954 sum 4.434 -15.076 2.470 15.908 Atomic orbital electron populations 1.70106 1.07825 1.27879 1.51325 1.25985 0.95801 1.03407 0.94506 0.85396 0.78611 0.78182 0.78535 1.19775 1.20470 1.18737 1.21607 0.93506 0.92301 1.51131 0.92285 1.18924 0.94271 0.92208 0.95142 1.21759 0.95615 0.88322 0.98462 1.60479 1.19901 1.01548 1.50226 1.22181 0.94621 0.90287 0.95755 0.91637 1.23073 1.01737 0.98212 0.95939 1.22386 0.98761 0.93466 1.00439 1.23053 0.99541 0.98865 0.97009 1.22393 0.94447 0.92540 0.85865 0.92214 1.86478 1.57029 1.49397 1.46242 0.92658 0.98854 0.98662 0.96029 0.93180 0.83919 0.91148 0.91859 0.91273 0.89846 0.89148 0.89926 0.75704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.77 5.23 29.85 0.16 1.92 16 10 C 0.09 3.89 5.45 86.30 0.47 4.36 16 11 N -0.69 -25.87 6.17 -487.86 -3.01 -28.88 16 12 C 0.08 2.54 3.03 45.64 0.14 2.68 16 13 H 0.07 2.31 7.65 -2.38 -0.02 2.29 16 14 C -0.15 -3.81 6.39 31.67 0.20 -3.61 16 15 C -0.11 -2.18 6.91 31.89 0.22 -1.96 16 16 C -0.15 -2.68 6.56 31.67 0.21 -2.48 16 17 C 0.11 2.73 4.06 31.32 0.13 2.85 16 18 H 0.06 1.63 7.92 -2.39 -0.02 1.61 16 19 O -0.58 -14.76 13.22 -148.98 -1.97 -16.73 16 20 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 21 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 22 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 23 H 0.02 0.93 8.10 -2.39 -0.02 0.91 16 24 H 0.05 2.29 8.07 -2.39 -0.02 2.28 16 25 H 0.34 12.08 8.13 -89.69 -0.73 11.35 16 26 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.39 5.87 9.08 -74.06 -0.67 5.20 16 Total: -1.00 -67.92 265.20 -0.75 -68.67 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.30 Total: 14.98 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 2.22 Total: -27.61 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.72 Total: -86.32 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.97 Total: -16.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.92 -0.75 -68.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323824990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.926 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds