Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47063 * 179.97438 * 10 9 7 12 12 C 1.46892 * 111.00019 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.01836 * 34.94129 * 12 11 10 14 14 C 1.54266 * 110.03322 * 273.54822 * 12 11 10 15 15 C 1.54897 * 104.19509 * 217.10551 * 14 12 11 16 16 C 1.54889 * 102.74783 * 37.94467 * 15 14 12 17 17 C 1.53872 * 110.03238 * 156.38201 * 12 11 10 18 18 H 1.09002 * 110.03276 * 359.97438 * 17 12 11 19 19 O 1.42906 * 110.03241 * 238.56973 * 17 12 11 20 20 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 22 22 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 23 23 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 24 24 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 25 25 H 1.00901 * 110.99829 * 56.04592 * 11 10 9 26 26 H 1.09001 * 110.48962 * 335.78342 * 14 12 11 27 27 H 1.09001 * 110.48839 * 98.29714 * 14 12 11 28 28 H 1.09007 * 110.75386 * 156.25635 * 15 14 12 29 29 H 1.08998 * 110.75313 * 279.62573 * 15 14 12 30 30 H 1.08991 * 110.48643 * 80.73719 * 16 15 14 31 31 H 1.09004 * 110.48287 * 203.38239 * 16 15 14 32 32 H 0.96708 * 113.99510 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5110 -4.9343 0.0001 12 6 2.4354 -6.0758 -0.0005 13 1 3.3231 -5.8374 0.5854 14 6 2.8367 -6.4301 -1.4473 15 6 2.9214 -7.9768 -1.4500 16 6 1.7401 -8.3854 -0.5355 17 6 1.7382 -7.3190 0.5793 18 1 0.7140 -7.0751 0.8615 19 8 2.4585 -7.7984 1.7166 20 1 -0.4849 -0.8401 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6241 -2.5567 -0.8903 23 1 2.8720 -3.6043 -0.8905 24 1 2.8720 -3.6044 0.8894 25 1 0.8743 -4.9846 -0.7811 26 1 2.0756 -6.0886 -2.1489 27 1 3.8044 -5.9926 -1.6929 28 1 2.7837 -8.3694 -2.4576 29 1 3.8695 -8.3124 -1.0298 30 1 0.8019 -8.3596 -1.0897 31 1 1.9086 -9.3768 -0.1147 32 1 2.0685 -8.5823 2.1273 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323825000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = -75.673451 kcal Electronic energy + Delta-G solvation = -12758.984768 eV Core-core repulsion = 10525.209352 eV Total energy + Delta-G solvation = -2233.775416 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.05677 -35.77422 -34.31948 -32.77683 -29.32648 -27.72825 -26.08946 -23.37279 -20.99423 -20.97255 -19.87164 -17.05138 -16.67898 -15.78552 -15.61767 -14.47312 -13.73907 -13.71124 -13.43503 -12.81503 -12.58559 -12.34694 -12.00269 -11.64533 -11.31418 -11.13541 -10.81736 -10.70738 -10.51872 -10.16060 -10.10300 -9.85339 -9.67941 -8.55333 -8.29658 -7.88556 -6.33606 -4.02136 3.45805 3.49504 3.65160 4.12296 4.45660 4.58235 4.61649 4.94160 5.08110 5.33576 5.44477 5.50999 5.56027 5.60017 5.75688 5.80034 5.90634 6.00423 6.10927 6.24641 6.29118 6.36364 6.84835 7.28826 7.52042 7.70159 7.71864 7.87904 8.27453 8.49786 8.91883 9.70356 11.07712 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068939 B = 0.006222 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.059546 B = 4498.857579 C = 4577.432938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.073 2.927 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.048 0.952 9 C 0.011 3.989 10 C 0.075 3.925 11 N -0.686 5.686 12 C 0.088 3.912 13 H 0.088 0.912 14 C -0.152 4.152 15 C -0.118 4.118 16 C -0.157 4.157 17 C 0.106 3.894 18 H 0.069 0.931 19 O -0.565 6.565 20 H 0.270 0.730 21 H 0.016 0.984 22 H 0.004 0.996 23 H 0.018 0.982 24 H 0.060 0.940 25 H 0.336 0.664 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -15.893 -1.823 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.026 4.026 10 C -0.053 4.053 11 N -0.316 5.316 12 C -0.023 4.023 13 H 0.106 0.894 14 C -0.191 4.191 15 C -0.156 4.156 16 C -0.195 4.195 17 C 0.046 3.954 18 H 0.087 0.913 19 O -0.369 6.369 20 H 0.080 0.920 21 H 0.035 0.965 22 H 0.023 0.977 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.154 0.846 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.911 -13.714 -1.275 14.318 hybrid contribution 0.175 -2.168 -0.837 2.330 sum 4.086 -15.882 -2.112 16.534 Atomic orbital electron populations 1.70740 1.06879 1.30696 1.46671 1.25850 0.96564 1.02701 0.93785 0.83497 0.74594 0.75037 0.76768 1.21413 1.21000 1.21549 1.22027 0.94284 0.91992 1.55835 0.93362 1.19211 0.94702 0.92295 0.96385 1.22023 0.96655 0.87700 0.98963 1.60586 1.19431 1.02036 1.49576 1.22073 0.95712 0.90330 0.94137 0.89403 1.23121 1.02084 0.96159 0.97771 1.22388 0.98496 0.95569 0.99161 1.23102 0.99198 0.98964 0.98230 1.22497 0.95506 0.92520 0.84849 0.91324 1.86537 1.55527 1.49311 1.45567 0.91999 0.96548 0.97741 0.96321 0.92135 0.84632 0.91322 0.91392 0.91806 0.91341 0.90969 0.91333 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.66 13.65 55.43 0.76 -27.90 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.89 29.90 -169.99 -5.08 20.80 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.60 -17.73 9.11 -34.44 -0.31 -18.04 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.01 0.31 4.54 -27.88 -0.13 0.18 16 10 C 0.07 1.65 5.45 -3.82 -0.02 1.62 16 11 N -0.69 -12.68 6.17 -105.56 -0.65 -13.33 16 12 C 0.09 1.39 3.03 -66.60 -0.20 1.19 16 13 H 0.09 1.54 7.65 -51.93 -0.40 1.14 16 14 C -0.15 -2.03 6.39 -25.07 -0.16 -2.19 16 15 C -0.12 -1.30 6.91 -24.73 -0.17 -1.47 16 16 C -0.16 -1.66 6.56 -25.07 -0.16 -1.82 16 17 C 0.11 1.41 4.06 -25.61 -0.10 1.31 16 18 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 19 O -0.56 -7.52 13.22 -35.23 -0.47 -7.99 16 20 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 21 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 22 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 23 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 24 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 25 H 0.34 5.85 8.13 -39.29 -0.32 5.53 16 26 H 0.07 0.91 7.58 -51.93 -0.39 0.52 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 32 H 0.37 3.14 9.11 45.56 0.41 3.55 16 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -32.38 263.93 -7.21 -39.59 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.38 Total: 3.73 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.36 Total: -18.88 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.11 Total: -41.23 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.47 Total: -7.99 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.80 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.38 -7.21 -39.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323825000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.083 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds