Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47063 * 179.97438 * 10 9 7 12 12 C 1.46892 * 111.00019 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.01836 * 34.94129 * 12 11 10 14 14 C 1.54266 * 110.03322 * 273.54822 * 12 11 10 15 15 C 1.54897 * 104.19509 * 217.10551 * 14 12 11 16 16 C 1.54889 * 102.74783 * 37.94467 * 15 14 12 17 17 C 1.53872 * 110.03238 * 156.38201 * 12 11 10 18 18 H 1.09002 * 110.03276 * 359.97438 * 17 12 11 19 19 O 1.42906 * 110.03241 * 238.56973 * 17 12 11 20 20 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 22 22 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 23 23 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 24 24 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 25 25 H 1.00901 * 110.99829 * 56.04592 * 11 10 9 26 26 H 1.09001 * 110.48962 * 335.78342 * 14 12 11 27 27 H 1.09001 * 110.48839 * 98.29714 * 14 12 11 28 28 H 1.09007 * 110.75386 * 156.25635 * 15 14 12 29 29 H 1.08998 * 110.75313 * 279.62573 * 15 14 12 30 30 H 1.08991 * 110.48643 * 80.73719 * 16 15 14 31 31 H 1.09004 * 110.48287 * 203.38239 * 16 15 14 32 32 H 0.96708 * 113.99510 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5110 -4.9343 0.0001 12 6 2.4354 -6.0758 -0.0005 13 1 3.3231 -5.8374 0.5854 14 6 2.8367 -6.4301 -1.4473 15 6 2.9214 -7.9768 -1.4500 16 6 1.7401 -8.3854 -0.5355 17 6 1.7382 -7.3190 0.5793 18 1 0.7140 -7.0751 0.8615 19 8 2.4585 -7.7984 1.7166 20 1 -0.4849 -0.8401 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6241 -2.5567 -0.8903 23 1 2.8720 -3.6043 -0.8905 24 1 2.8720 -3.6044 0.8894 25 1 0.8743 -4.9846 -0.7811 26 1 2.0756 -6.0886 -2.1489 27 1 3.8044 -5.9926 -1.6929 28 1 2.7837 -8.3694 -2.4576 29 1 3.8695 -8.3124 -1.0298 30 1 0.8019 -8.3596 -1.0897 31 1 1.9086 -9.3768 -0.1147 32 1 2.0685 -8.5823 2.1273 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323825000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = -100.466915 kcal Electronic energy + Delta-G solvation = -12760.059893 eV Core-core repulsion = 10525.209352 eV Total energy + Delta-G solvation = -2234.850541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.17673 -37.22749 -35.85642 -34.57112 -31.12650 -28.72682 -27.61917 -25.39183 -22.91751 -21.94676 -21.06731 -18.92622 -18.07458 -17.08627 -16.64749 -15.99878 -15.66198 -15.38116 -14.86444 -14.21398 -14.06833 -13.65520 -13.48483 -13.07989 -12.90716 -12.63784 -12.19318 -12.01792 -11.97737 -11.87744 -11.64404 -11.45655 -10.84482 -10.72702 -10.57043 -9.39835 -8.72577 -6.42907 1.51787 1.61457 1.79441 2.54665 2.96635 3.13581 3.38550 3.63036 3.93561 3.99153 4.24955 4.30459 4.41735 4.46410 4.54364 4.66315 4.76553 4.83524 4.89680 4.94850 5.07924 5.11080 5.24343 5.32759 5.39460 5.88253 6.10112 6.15521 6.39240 6.56472 6.93551 7.39658 8.68920 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068939 B = 0.006222 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.059546 B = 4498.857579 C = 4577.432938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.623 4.623 8 H 0.050 0.950 9 C 0.016 3.984 10 C 0.094 3.906 11 N -0.690 5.690 12 C 0.081 3.919 13 H 0.065 0.935 14 C -0.150 4.150 15 C -0.112 4.112 16 C -0.146 4.146 17 C 0.107 3.893 18 H 0.060 0.940 19 O -0.583 6.583 20 H 0.256 0.744 21 H -0.009 1.009 22 H -0.008 1.008 23 H 0.021 0.979 24 H 0.050 0.950 25 H 0.342 0.658 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -16.878 -2.338 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.944 3.056 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.661 4.661 8 H 0.068 0.932 9 C -0.021 4.021 10 C -0.035 4.035 11 N -0.321 5.321 12 C -0.029 4.029 13 H 0.083 0.917 14 C -0.190 4.190 15 C -0.150 4.150 16 C -0.184 4.184 17 C 0.048 3.952 18 H 0.078 0.922 19 O -0.391 6.391 20 H 0.065 0.935 21 H 0.009 0.991 22 H 0.011 0.989 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.161 0.839 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.747 -14.757 -1.783 15.605 hybrid contribution -0.102 -1.927 -0.637 2.032 sum 4.646 -16.684 -2.420 17.487 Atomic orbital electron populations 1.70881 1.07932 1.29923 1.48549 1.27512 0.96614 1.06923 0.92494 0.82868 0.74125 0.70768 0.77872 1.19750 1.20522 1.19353 1.22455 0.94684 0.93394 1.55588 0.93190 1.19101 0.94970 0.93626 0.94449 1.21619 0.95334 0.88047 0.98526 1.60489 1.19951 1.01485 1.50184 1.22189 0.94584 0.90238 0.95863 0.91670 1.23069 1.01720 0.98355 0.95823 1.22384 0.98815 0.93303 1.00511 1.23048 0.99529 0.98898 0.96948 1.22382 0.94419 0.92454 0.85942 0.92167 1.86482 1.56040 1.50767 1.45849 0.93485 0.99104 0.98943 0.96051 0.93190 0.83913 0.91191 0.91907 0.89766 0.91232 0.89886 0.89072 0.75630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.54 13.65 21.45 0.29 -59.25 16 2 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 3 Si 1.12 51.38 29.90 68.60 2.05 53.43 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.62 -37.04 9.11 25.60 0.23 -36.81 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.02 0.88 4.54 29.85 0.14 1.01 16 10 C 0.09 4.20 5.45 86.30 0.47 4.67 16 11 N -0.69 -25.66 6.17 -487.87 -3.01 -28.67 16 12 C 0.08 2.52 3.03 45.64 0.14 2.66 16 13 H 0.06 2.30 7.65 -2.39 -0.02 2.29 16 14 C -0.15 -3.81 6.39 31.67 0.20 -3.60 16 15 C -0.11 -2.15 6.91 31.89 0.22 -1.93 16 16 C -0.15 -2.64 6.56 31.67 0.21 -2.43 16 17 C 0.11 2.71 4.06 31.32 0.13 2.84 16 18 H 0.06 1.61 7.92 -2.39 -0.02 1.59 16 19 O -0.58 -14.63 13.22 -148.98 -1.97 -16.59 16 20 H 0.26 16.52 7.22 -92.71 -0.67 15.85 16 21 H -0.01 -0.56 8.01 -2.39 -0.02 -0.58 16 22 H -0.01 -0.44 8.01 -2.39 -0.02 -0.46 16 23 H 0.02 0.93 8.10 -2.39 -0.02 0.92 16 24 H 0.05 2.32 8.07 -2.39 -0.02 2.30 16 25 H 0.34 11.92 8.13 -89.69 -0.73 11.19 16 26 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.27 8.06 -2.39 -0.02 1.25 16 32 H 0.39 5.78 9.11 -74.05 -0.67 5.11 16 Total: -1.00 -69.68 263.93 -0.64 -70.32 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.20 Total: 16.18 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 2.20 Total: -35.41 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.72 Total: -87.92 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.97 Total: -16.59 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -69.68 -0.64 -70.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323825000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.150 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds