Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99676 * 2 1 4 4 H 1.48497 * 109.47145 * 269.99945 * 3 2 1 5 5 H 1.48503 * 109.46994 * 29.99813 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99432 * 3 2 1 7 7 C 1.37868 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00450 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47370 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00058 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47028 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47021 * 64.99816 * 12 11 10 14 14 C 1.46906 * 110.99697 * 179.97438 * 13 12 11 15 15 C 1.53786 * 113.61279 * 254.13512 * 14 13 12 16 16 C 1.53962 * 87.01719 * 220.04907 * 15 14 13 17 17 C 1.53781 * 113.61285 * 156.52856 * 14 13 12 18 18 H 0.97001 * 120.00265 * 0.02562 * 1 2 3 19 19 H 1.09006 * 109.47174 * 59.99923 * 9 7 2 20 20 H 1.09004 * 109.47201 * 300.00219 * 9 7 2 21 21 H 1.09002 * 109.47305 * 59.99779 * 11 10 9 22 22 H 1.09005 * 109.46701 * 300.00065 * 11 10 9 23 23 H 1.08998 * 109.47174 * 304.99716 * 12 11 10 24 24 H 1.09009 * 109.46914 * 184.99802 * 12 11 10 25 25 H 1.00904 * 111.00413 * 56.04982 * 13 12 11 26 26 H 1.08993 * 112.85276 * 25.33331 * 14 13 12 27 27 H 1.09000 * 113.61666 * 334.56695 * 15 14 13 28 28 H 1.09000 * 113.61138 * 105.47366 * 15 14 13 29 29 H 1.08997 * 113.53543 * 270.80998 * 16 15 14 30 30 H 1.09004 * 113.66374 * 139.93102 * 16 15 14 31 31 H 1.09001 * 113.61695 * 254.52859 * 17 14 13 32 32 H 1.09002 * 113.61213 * 25.34919 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7002 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5654 -4.8753 0.0000 12 6 2.6485 -5.9560 -0.0006 13 7 3.4086 -5.8881 1.2545 14 6 4.4594 -6.9141 1.2897 15 6 4.1398 -8.0914 2.2261 16 6 5.6216 -8.0576 2.6427 17 6 5.6210 -6.5739 2.2383 18 1 -0.4850 0.8400 -0.0004 19 1 0.6249 -2.5571 -0.8897 20 1 0.6242 -2.5567 0.8903 21 1 0.9455 -4.9822 -0.8903 22 1 0.9450 -4.9826 0.8898 23 1 3.3219 -5.7951 -0.8424 24 1 2.1825 -6.9374 -0.0906 25 1 2.7968 -5.9702 2.0527 26 1 4.7835 -7.2224 0.2957 27 1 3.4535 -7.8338 3.0328 28 1 3.8538 -9.0023 1.7003 29 1 6.2634 -8.6799 2.0191 30 1 5.7801 -8.2195 3.7090 31 1 6.5290 -6.2616 1.7225 32 1 5.3406 -5.8996 3.0475 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385811071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = -35.975979 kcal Electronic energy + Delta-G solvation = -12458.647361 eV Core-core repulsion = 10226.593356 eV Total energy + Delta-G solvation = -2232.054004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.98443 -36.73088 -33.92558 -32.51769 -28.56137 -26.59936 -25.58643 -23.62230 -22.24335 -21.51196 -19.51256 -16.36956 -16.01829 -15.81475 -15.34906 -14.65317 -14.38429 -13.63197 -13.37557 -13.03109 -12.49400 -12.34570 -12.03098 -11.80955 -11.30303 -10.98556 -10.77732 -10.71219 -10.54804 -10.46309 -10.19855 -9.87116 -9.02583 -8.74437 -8.09654 -8.03405 -6.04843 -4.05654 3.34849 3.39423 3.45871 4.32784 4.41066 4.59657 4.67483 4.88019 4.95217 5.01909 5.31644 5.48476 5.59708 5.61828 5.73118 5.75152 5.79302 6.02994 6.05790 6.13437 6.16939 6.31661 6.40618 7.16909 7.31522 7.50155 7.63802 7.87347 8.23568 8.68788 9.09418 9.59118 11.06917 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054305 B = 0.006008 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.485323 B = 4659.453623 C = 5029.134474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.064 3.936 12 C 0.065 3.935 13 N -0.666 5.666 14 C 0.068 3.932 15 C -0.172 4.172 16 C -0.142 4.142 17 C -0.129 4.129 18 H 0.263 0.737 19 H 0.002 0.998 20 H 0.003 0.997 21 H 0.039 0.961 22 H 0.033 0.967 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.341 0.659 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -14.772 3.154 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.014 4.014 12 C -0.064 4.064 13 N -0.296 5.296 14 C -0.043 4.043 15 C -0.212 4.212 16 C -0.180 4.180 17 C -0.168 4.168 18 H 0.072 0.928 19 H 0.020 0.980 20 H 0.021 0.979 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.160 0.840 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.046 -14.096 2.914 16.026 hybrid contribution -0.592 0.024 0.140 0.609 sum 6.454 -14.072 3.054 15.779 Atomic orbital electron populations 1.69969 1.06109 1.27028 1.50977 1.24947 0.94955 0.99400 0.95272 0.86344 0.79716 0.82303 0.78179 1.20522 1.21144 1.19591 1.21078 0.94122 0.89369 1.50253 0.91502 1.20189 0.88877 0.83970 0.95106 1.87959 1.34638 1.12356 1.95014 1.22245 0.93943 0.86403 0.98819 1.22009 0.95798 0.95491 0.93148 1.60273 1.16089 1.48926 1.04296 1.23052 0.93739 0.89667 0.97875 1.23730 0.97295 0.99835 1.00330 1.22745 0.96488 0.97747 1.01057 1.23041 0.98440 0.95635 0.99668 0.92763 0.98022 0.97897 0.94258 0.94846 0.90484 0.94919 0.84031 0.88900 0.90078 0.91964 0.90482 0.91563 0.91527 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -15.50 9.43 -34.44 -0.32 -15.83 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.19 5.48 5.69 36.01 0.20 5.69 16 10 O -0.38 -9.58 10.27 -35.23 -0.36 -9.94 16 11 C 0.06 1.23 6.22 37.16 0.23 1.46 16 12 C 0.06 1.00 5.92 -3.83 -0.02 0.98 16 13 N -0.67 -10.19 6.56 -105.86 -0.69 -10.89 16 14 C 0.07 0.83 4.16 -66.89 -0.28 0.55 16 15 C -0.17 -1.74 7.72 -25.82 -0.20 -1.94 16 16 C -0.14 -1.35 8.09 -25.82 -0.21 -1.56 16 17 C -0.13 -1.51 7.88 -25.92 -0.20 -1.71 16 18 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 19 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 20 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 24 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.34 4.91 8.21 -39.29 -0.32 4.59 16 26 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 27 H 0.08 0.81 7.83 -51.93 -0.41 0.41 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -31.92 271.14 -7.49 -39.41 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.33 Total: -2.35 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.90 Total: -10.84 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.04 Total: -37.69 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.36 Total: -9.94 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.92 -7.49 -39.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385811071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.432 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds