Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99767 * 2 1 4 4 H 1.48497 * 109.47028 * 270.00438 * 3 2 1 5 5 H 1.48491 * 109.47160 * 30.00753 * 3 2 1 6 6 H 1.48501 * 109.46632 * 150.00475 * 3 2 1 7 7 C 1.37872 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00470 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00042 * 179.97438 * 7 2 1 10 10 O 1.42896 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00140 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47412 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46950 * 65.00415 * 12 11 10 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 12 16 16 C 1.53000 * 117.50165 * 243.62147 * 15 14 13 17 17 C 1.52994 * 59.99907 * 252.50793 * 16 15 14 18 18 H 0.96999 * 119.99710 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47273 * 59.99500 * 9 7 2 20 20 H 1.09005 * 109.46758 * 299.99297 * 9 7 2 21 21 H 1.09004 * 109.46697 * 59.99791 * 11 10 9 22 22 H 1.09006 * 109.47202 * 300.00273 * 11 10 9 23 23 H 1.08995 * 109.47319 * 305.00344 * 12 11 10 24 24 H 1.09003 * 109.47435 * 184.99669 * 12 11 10 25 25 H 1.00908 * 110.99583 * 303.94989 * 13 12 11 26 26 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 27 27 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 28 28 H 1.09003 * 115.54795 * 29.32512 * 15 14 13 29 29 H 1.09001 * 117.49810 * 359.97438 * 16 15 14 30 30 H 1.08995 * 117.50134 * 145.01745 * 16 15 14 31 31 H 1.09004 * 117.49933 * 252.50827 * 17 16 15 32 32 H 1.09002 * 117.49788 * 107.49222 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6542 -0.0021 12 6 5.8070 -4.1324 -0.0012 13 7 5.3667 -4.7574 -1.2557 14 6 5.7288 -6.1807 -1.2901 15 6 5.2544 -6.7959 -2.6082 16 6 4.1948 -7.8971 -2.5330 17 6 5.6405 -8.2494 -2.8888 18 1 -0.4850 0.8401 0.0004 19 1 3.8753 -0.6803 0.8888 20 1 3.8745 -0.6801 -0.8912 21 1 5.8159 -2.1702 0.8874 22 1 5.8146 -2.1709 -0.8926 23 1 5.3318 -4.6348 0.8413 24 1 6.8899 -4.2194 0.0874 25 1 4.3747 -4.6336 -1.3926 26 1 6.8111 -6.2823 -1.2101 27 1 5.2527 -6.6970 -0.4565 28 1 5.2121 -6.1135 -3.4571 29 1 3.8360 -8.1836 -1.5444 30 1 3.4552 -7.9392 -3.3324 31 1 5.8520 -8.5235 -3.9224 32 1 6.2325 -8.7676 -2.1344 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385815602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -30.195234 kcal Electronic energy + Delta-G solvation = -12326.000435 eV Core-core repulsion = 10094.197102 eV Total energy + Delta-G solvation = -2231.803332 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.02123 -37.02011 -34.72469 -32.59450 -29.59636 -27.53856 -24.86749 -22.45421 -21.90430 -21.43329 -20.42507 -16.86137 -16.37637 -15.69122 -15.41442 -14.71256 -14.43481 -14.23422 -13.71668 -13.11169 -12.66851 -12.36411 -12.01677 -11.61979 -11.51492 -11.34807 -10.94462 -10.76229 -10.60396 -10.25767 -10.00975 -9.85939 -9.18436 -8.84780 -8.46668 -8.24233 -6.11515 -4.10584 3.25692 3.32433 3.34085 3.71645 4.25503 4.36042 4.70058 4.78444 4.87281 5.06520 5.20210 5.35409 5.43363 5.52655 5.58036 5.64387 5.77676 5.83128 5.93367 6.02981 6.08330 6.19411 6.26908 6.62217 7.00884 7.20737 7.58995 7.65033 8.01605 8.66555 8.99151 9.47909 11.01538 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051274 B = 0.006005 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.959842 B = 4661.368814 C = 5031.079948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.058 3.942 12 C 0.065 3.935 13 N -0.687 5.687 14 C 0.089 3.911 15 C -0.148 4.148 16 C -0.183 4.183 17 C -0.180 4.180 18 H 0.266 0.734 19 H 0.002 0.998 20 H 0.000 1.000 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.076 0.924 25 H 0.358 0.642 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.332 -11.014 -2.792 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.095 3.905 10 O -0.304 6.304 11 C -0.020 4.020 12 C -0.064 4.064 13 N -0.320 5.320 14 C -0.040 4.040 15 C -0.167 4.167 16 C -0.220 4.220 17 C -0.218 4.218 18 H 0.076 0.924 19 H 0.020 0.980 20 H 0.017 0.983 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.177 0.823 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.590 -10.837 -3.129 16.904 hybrid contribution -0.102 0.793 0.622 1.013 sum 12.488 -10.044 -2.507 16.221 Atomic orbital electron populations 1.69879 1.06074 1.27094 1.50401 1.24766 0.94802 0.98780 0.94608 0.86836 0.80313 0.83709 0.78809 1.19877 1.20804 1.19125 1.20894 0.88310 0.95290 1.51214 0.90036 1.20580 0.96078 0.79439 0.94361 1.87846 1.17697 1.29728 1.95088 1.22386 0.84845 0.95200 0.99595 1.21930 0.99514 0.94195 0.90751 1.60478 1.23871 1.12446 1.35241 1.21490 1.00027 0.88429 0.94086 1.22338 1.03251 0.91081 1.00022 1.23062 0.92152 1.03788 1.03012 1.22916 0.98420 0.98221 1.02225 0.92370 0.98040 0.98261 0.93984 0.93370 0.94654 0.90602 0.82251 0.91146 0.95364 0.86897 0.88923 0.88786 0.88894 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -15.55 9.99 -34.44 -0.34 -15.89 16 8 H 0.08 2.66 8.06 -52.48 -0.42 2.24 16 9 C 0.17 4.39 4.76 36.01 0.17 4.56 16 10 O -0.38 -8.95 9.85 -35.23 -0.35 -9.30 16 11 C 0.06 1.03 6.28 37.16 0.23 1.26 16 12 C 0.07 0.98 6.11 -3.82 -0.02 0.95 16 13 N -0.69 -10.38 6.50 -113.78 -0.74 -11.12 16 14 C 0.09 1.10 5.97 -3.83 -0.02 1.08 16 15 C -0.15 -1.71 5.95 -90.62 -0.54 -2.25 16 16 C -0.18 -1.94 10.18 -26.73 -0.27 -2.21 16 17 C -0.18 -1.71 10.25 -26.74 -0.27 -1.99 16 18 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 19 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 20 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.36 6.08 8.29 -39.29 -0.33 5.75 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.35 7.87 -51.93 -0.41 -0.06 16 28 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -30.98 272.08 -7.36 -38.35 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.31 Total: 0.53 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.17 Total: -12.44 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.03 Total: -38.13 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.35 Total: -9.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.98 -7.36 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385815602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.153 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds