Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 N 1.46492 * 109.47381 * 179.97438 * 6 5 4 8 8 C 1.36942 * 119.99922 * 85.00314 * 7 6 5 9 9 H 1.08000 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.38812 * 119.99916 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00014 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47383 * 89.99488 * 12 10 8 14 14 H 1.48500 * 109.47038 * 209.99510 * 12 10 8 15 15 H 1.48501 * 109.46855 * 329.99066 * 12 10 8 16 16 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 17 17 C 1.52997 * 109.47445 * 300.00628 * 16 6 5 18 18 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 19 19 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 21 21 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 22 22 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 25 25 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 26 26 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 27 27 H 0.97000 * 120.00270 * 265.00060 * 7 6 5 28 28 H 0.96993 * 119.99872 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.46726 * 180.02562 * 16 6 5 30 30 H 1.09002 * 109.46589 * 60.00959 * 16 6 5 31 31 H 1.09002 * 109.47045 * 300.00058 * 17 16 6 32 32 H 1.09000 * 109.47140 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 7 1.5511 -4.2660 0.0005 8 6 2.2383 -5.2358 -0.6797 9 1 3.1405 -4.9824 -1.2166 10 6 1.7748 -6.5442 -0.6798 11 7 0.6751 -6.8529 -0.0258 12 14 2.7119 -7.8669 -1.6081 13 1 3.7174 -8.4857 -0.7076 14 1 1.7629 -8.9073 -2.0796 15 1 3.4000 -7.2592 -2.7753 16 6 1.5299 -2.1637 1.2494 17 6 2.0399 -0.7212 1.2493 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.7211 1.8653 -0.7650 22 1 1.6767 -0.2075 -2.1392 23 1 3.1301 -0.7217 -1.2489 24 1 1.8930 -2.6775 -2.1393 25 1 0.4400 -2.1638 -1.2491 26 1 3.1299 -2.8850 0.0002 27 1 0.7406 -4.4935 0.4824 28 1 0.3514 -7.7672 -0.0256 29 1 1.8936 -2.6773 2.1394 30 1 0.4399 -2.1637 1.2493 31 1 3.1300 -0.7212 1.2493 32 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575568153.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = -60.706372 kcal Electronic energy + Delta-G solvation = -13320.391732 eV Core-core repulsion = 11087.265338 eV Total energy + Delta-G solvation = -2233.126395 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.33683 -35.88410 -33.43379 -30.99238 -30.43629 -28.56712 -26.12388 -23.37218 -22.31979 -20.68519 -18.64606 -16.97638 -16.67070 -15.37200 -14.79092 -14.45845 -13.73328 -13.50199 -13.29466 -12.65168 -12.17044 -11.97398 -11.73385 -11.55103 -11.38089 -11.17741 -10.83521 -10.65117 -10.59617 -10.19127 -9.95240 -9.80697 -9.61723 -9.32445 -8.85289 -6.93408 -5.74999 -3.03358 3.44279 3.49449 3.50980 4.31451 4.61214 4.95257 5.01047 5.22632 5.50946 5.57912 5.63543 5.70412 5.73610 5.88396 5.93770 6.00169 6.17555 6.21043 6.33808 6.38786 6.44028 6.58456 6.60358 6.76085 7.00950 7.16403 7.72003 7.78640 8.44118 9.54950 10.13642 10.48442 11.47868 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069356 B = 0.008093 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.614592 B = 3459.037716 C = 3573.340746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 O -0.567 6.567 4 C -0.140 4.140 5 C -0.134 4.134 6 C 0.177 3.823 7 N -0.726 5.726 8 C -0.237 4.237 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.124 4.124 17 C -0.097 4.097 18 H 0.051 0.949 19 H 0.078 0.922 20 H 0.057 0.943 21 H 0.370 0.630 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.383 0.617 28 H 0.255 0.745 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 13.200 -0.443 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 O -0.373 6.373 4 C -0.178 4.178 5 C -0.175 4.175 6 C 0.067 3.933 7 N -0.366 5.366 8 C -0.368 4.368 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.162 4.162 17 C -0.136 4.136 18 H 0.071 0.929 19 H 0.097 0.903 20 H 0.076 0.924 21 H 0.217 0.783 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.779 12.864 0.025 12.888 hybrid contribution -0.113 -0.701 -1.006 1.231 sum 0.666 12.164 -0.981 12.221 Atomic orbital electron populations 1.22572 0.96122 1.03530 1.01497 1.21241 0.92545 0.81273 0.96024 1.86522 1.77510 1.24006 1.49263 1.22206 1.01301 0.97703 0.96594 1.22278 1.00790 0.92841 1.01572 1.20234 0.96780 0.85240 0.91075 1.42435 1.30434 1.02171 1.61554 1.19258 1.05298 0.88286 1.23948 0.91226 1.24737 0.97893 0.97374 1.01084 1.69659 1.23282 1.18565 1.46768 0.86207 0.78780 0.81932 0.79396 1.21747 1.21809 1.20808 1.21857 1.00987 0.93552 0.99797 1.21387 1.01171 0.95246 0.95756 0.92944 0.90293 0.92409 0.78332 0.92788 0.91690 0.91946 0.92300 0.93593 0.78335 0.93560 0.91390 0.91835 0.91539 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.12 37.16 0.30 -2.00 16 2 C 0.13 1.79 1.15 -90.62 -0.10 1.68 16 3 O -0.57 -7.46 12.98 -35.23 -0.46 -7.92 16 4 C -0.14 -2.04 5.07 -26.73 -0.14 -2.17 16 5 C -0.13 -2.41 5.23 -26.73 -0.14 -2.55 16 6 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 7 N -0.73 -18.30 5.12 -53.43 -0.27 -18.57 16 8 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 12 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.12 -2.09 5.12 -26.73 -0.14 -2.23 16 17 C -0.10 -1.45 5.10 -26.73 -0.14 -1.58 16 18 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 19 H 0.08 1.11 4.81 -51.93 -0.25 0.86 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.37 3.40 9.05 45.56 0.41 3.81 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 1.06 6.43 -51.93 -0.33 0.73 16 26 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 27 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 28 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.06 6.43 -51.93 -0.33 0.72 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 253.88 15.07 3.83 3.83 Total: -1.00 -30.50 253.88 -6.16 -36.66 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.17 Total: 8.91 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.78 Total: -12.79 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.45 Total: -46.21 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.46 Total: -7.92 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.50 -6.16 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575568153.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.046 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds